Table 3.
Summary of binning performance for 31 ICoVeR-refined genome bins initially assigned with different binning algorithms for AD microbiome dataset
| Binning algorithm | Average completeness (%) | Average contamination (%) | F1 (%) |
|---|---|---|---|
| MetaBAT_1 | 66.3 | 1.4 | 75.4 |
| MetaBAT_2 | 70.4 | 2.2 | 79.3 |
| MyCC | 78.3 | 8.9 | 82.5 |
| CONCOCTa | 87.3 | 42.7 | 56.9 |
| ICoVeR | 76.6 | 1.8 | 84.4 |
aThe relatively lower performance of CONCOCT on the AD microbiome dataset may be attributed to the loss of precision due to insufficient number of samples analysed (accuracy starts to decrease below 50 samples). Results for ICoVeR are highlighted in bold font