Table 4.
Completeness and contamination for nine ICoVeR-refined genome bins for Sharon’s dataset
| Bina | Marker lineageb | ICoVeR | MaxBin2c | MyCCc | CONCOCTc | MetaBATc | GroopMc | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Compl. % | Cont. % | Compl. % | Cont. % | Compl. % | Cont. % | Compl. % | Cont. % | Compl. % | Cont. % | Compl. % | Cont. % | ||
| 1 | Lactobacillales (UID544) | 99.2 | 0 | 99.2 | 0 | 99.2 | 0 | 100 | 204.2 | 99.2 | 0 | 99.2 | 0 |
| 2 | Clostridiales (UID1120) | 98.9 | 0 | 98.9 | 0 | 98.9 | 0 | 98.9 | 0 | 98.9 | 0 | NB | |
| 3 | Actinomycetales (UID1530) | 97.9 | 0 | 22.4 | 0 | 97.9 | 0 | 97.9 | 0 | 100 | 37.9 | 97.9 | 0 |
| 66.9 | 0 | ||||||||||||
| 4 | Staphylococcus (UID301) | 99.5 | 0.1 | 99.5 | 0.1 | 99.5 | 0.1 | 99.5 | 2.9 | 99.5 | 2.9 | 99.5 | 0.1 |
| 5 | Staphylococcus (UID294) | 95.9 | 0 | 97 | 1.1 | 100 | 104.2 | 100 | 204.2 | 100 | 108.3 | 100 | 104.2 |
| 6 | Staphylococcus (UID294) | 97.9 | 2.8 | 97.9 | 3.4 | ||||||||
| 7 | Staphylococcus (UID298) | 95.4 | 0.6 | 100 | 24.4 | 95.4 | 0.6 | 95.4 | 0.6 | 95.4 | 0.6 | 95.8 | 1.7 |
| 8 | Staphylococcus (UID298) | 84.1 | 0 | 84.9 | 2.5 | 78.7 | 0 | 84.1 | 0 | 84.1 | 0 | 82.5 | 3.0 |
| 9 | Leuconostocaceae (UID486) | 45.1 | 0.2 | 72.8 | 37.9 | 45.1 | 0.2 | 45.1 | 0.2 | 37.7 | 0 | 24.7 | 0 |
aNumber corresponds to the ICoVeR-refined bin (Table S3)
bMarker lineage was defined by CheckM. Completeness and contamination were calculated with CheckM (highlighted in bold font for ICoVeR-refined bins)
cBin assignments for MaxBin2, MyCC, CONCOCT, MetaBAT and GroopM were downloaded from https://sourceforge.net/projects/sb2nhri/files/MyCC/Data/benchmark/Sharon.zip/download