Table 5.
Summary of binning performance for nine ICoVeR-refined genome bins initially assigned with different binning algorithms for Sharon’s dataset
| Binning algorithm | Average completeness (%) | Average contamination (%) | F1 (%) |
|---|---|---|---|
| MaxBin2 | 83.9 | 6.9 | 90.9 |
| MyCC | 89.3 | 13.1 | 71.7 |
| CONCOCT | 90.1 | 51.5 | 60.8 |
| MetaBAT | 89.4 | 18.7 | 68.6 |
| GroopM | 85.6 | 15.6 | 65.5 |
| ICoVeR | 90.4 | 0.4 | 93.8 |
Completeness and contamination were calculated with CheckM. Bin assignments for MaxBin2, MyCC, CONCOCT, MetaBAT and GroopM were downloaded from https://sourceforge.net/projects/sb2nhri/files/MyCC/Data/benchmark/Sharon.zip/download.. Results for ICoVeR are highlighted in bold font