Table 3. Polar interactions between BeSAHase atoms and molecules in the active site.
Since the interactions of the same ligand molecules bound in the same complex are very similar, only values for the ligands bound in subunit A (Ado and Ade) or subunit C (2′-dAdo) are listed. Distances are in Å.
| Atom in | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Ado/Cord complex | Ade/2′-dAdo complex | |||||||||||
| Ado | Cord | Ade complex | Ado complex | Ade | 2′-dAdo | |||||||
| Residue and atom | Atom | Distance | Atom | Distance | Atom | Distance | Atom | Distance | Atom | Distance | Atom | Distance |
| His58 N∊2 | O4′ | 3.23 | O4′ | 3.44 | Wat3 | 3.46 | O4′ | 2.95 | Wat3 | 3.38 | O4′ | 3.07 |
| His58 N∊2 | O5′ | 2.81 | — | — | Wat4 | 3.38 | O5′ | 2.66 | Wat4 | 2.90 | O5′ | 2.79 |
| Thr60 Oγ1 | N1 | 2.67 | N1 | 2.76 | N1 | 2.77 | N1 | 2.65 | N1 | 2.72 | N1 | 2.72 |
| Gln62 O∊1 | N6 | 2.91 | N6 | 2.92 | N6 | 2.87 | N6 | 2.84 | N6 | 2.86 | N6 | 2.86 |
| Asp135 Oδ1 | O5′ | 2.93 | — | — | Wat4 | 3.21 | O5′ | 2.66 | Wat4 | 2.77 | O5′ | 2.73 |
| Glu197 O∊2 | O2′ | 2.51 | — | — | Wat1 | 2.77 | O2′ | 3.12 | Wat1 | 2.37 | Wat1 | 2.33 |
| Thr198 Oγ1 | O3′ | 3.14 | — | — | Wat2 | 2.90 | O3′ | 2.91 | Wat2 | 3.05 | O3′ | 3.00 |
| Lys227 Nζ | O3′ | 2.97 | — | — | Wat2 | 2.72 | O3′ | 3.03 | Wat2 | 2.96 | O3′ | 2.94 |
| Asp231 Oδ2 | O2′ | 2.55 | O2′ | 2.47 | Wat1 | 2.62 | O2′ | 2.52 | Wat1 | 2.61 | Wat1 | 2.48 |
| His342 Nδ1 | — | — | — | — | Wat4 | 3.39 | — | — | Wat4 | 2.65 | O5′ | 2.57 |
| His392 N | N7 | 3.03 | N7 | 2.89 | N7 | 2.77 | N7 | 2.86 | N7 | 2.85 | N7 | 2.88 |
| His392 O | N6 | 3.01 | N6 | 3.06 | N6 | 2.93 | N6 | 3.03 | N6 | 3.03 | N6 | 3.04 |