Table 5. R.m.s. deviations (Å) for Cα atoms of superposed subunits of BeSAHase complexed with different ligands.
The closed and open subunits from the BeSAHase model with PDB code 4lvc (Manszewski et al., 2015 ▸) are included for comparison. Since the values for the same ligand molecules bound in the same complex are very similar, only data for the ligands bound in subunit A (Ado and Ade) or subunit C (2′-dAdo) are listed. Values were calculated with ALIGN (Cohen, 1997 ▸).
| Model† | Ado/Cord | Ado/Cord | Ade | Ado | Ade/2′-dAdo | Ade/2′-dAdo | 4lvc closed |
|---|---|---|---|---|---|---|---|
| Ado/Cord | 1.68 | ||||||
| Ade | 0.30 | 1.54 | |||||
| Ado | 0.26 | 1.66 | 0.30 | ||||
| Ade/2′-dAdo | 0.20 | 1.69 | 0.32 | 0.22 | |||
| Ade/2′-dAdo | 0.19 | 1.75 | 0.35 | 0.21 | 0.14 | ||
| 4lvc closed | 0.18 | 1.71 | 0.31 | 0.28 | 0.21 | 0.16 | |
| 4lvc open | 2.32 | 1.29 | 2.17 | 2.27 | 2.33 | 2.38 | 2.32 |
In mixed complexes, the subunit used for comparison is indicated by the ligand in bold.