Table 3.
Predicted cases based on the frequency of 1 in 500 | Historical data |
ALSPAC data |
||||
---|---|---|---|---|---|---|
Sequenced data only |
Extrapolated (if no further mutations found) |
Extrapolated (adjusted for verification bias) |
Extrapolated (adjusted for verification bias and NGS misclassification) |
|||
DR = 85% FPR = 0.1% |
DR = 83% FPR = 0.8% |
DR = 83% FPR = 0.2% |
DR = 63% FPR = 0.2% |
DR = 66.7% FPR = 0.2% |
||
ID: M/C | ID: M/C | ID: M/C | ID: M/C | ID: M/C | ||
Children (N = 10,000) | 20 | 17: 10 | 17: 80 | 17: 20 | 13: 20 | 13: 20 |
Parents (N = 20,000) | 20 | 16: 11 | 16: 81 | 16: 21 | 13: 20 | 13: 20 |
If initial biochemical screening was followed by NGS | ||||||
Children (N = 10,000) | 20 | 17: 0 | 17: 0 | 17: 0 | 13: 0 | 13: 0 |
Parents (N = 20,000) | 20 | 17: 0 | 17: 0 | 17: 0 | 13: 0 | 13: 0 |
Under all scenarios, the interpolation of a NGS for samples from all children who screen positive on the basis of an LDL-C above the diagnostic threshold, would reduce the misclassification rate to 0%.
DR = detection rate; FPR = false positive rate; NGS = next generation sequencing; ID: M/C = ratio of identified to misclassified.