. 2017 May 3;12(5):e0176831. doi: 10.1371/journal.pone.0176831

Table 2. Sequence data obtained from sequencing for seven housekeeping genes of Paenibacillus larvae in this study.

Loci	Sites of analysis (bp)^a	S^b	Hap^b	Hd^b	G+C content	π^b	θ^b	k^b	Neutrality test
Loci	Sites of analysis (bp)^a	S^b	Hap^b	Hd^b	G+C content	π^b	θ^b	k^b	TajimaD^c	FuLiD^c	FuLiF^c	FuFs^c
ilvD1	486	3	2	0.153	0.5077	0.00095	0.00148	0.4595	-0.8019	0.9246	0.4847	1.592
PurH	355	5	4	0.162	0.4805	0.00078	0.00341	0.2778	-2.0071^*	-3.4154^**	-3.4863^**	-2.433
Tri	437	3	2	0.149	0.4744	0.00103	0.00164	0.4481	-0.8225	0.9215	0.4738	1.557
recF	460	6	5	0.158	0.4407	0.00094	0.0032	0.4234	-1.9154^*	-2.8568^*	-3.0006^*	-1.428
pyrE	565	2	2	0.153	0.4829	0.00054	0.00085	0.3063	-0.6955	0.7802	0.4111	0.859
sucC	570	4	4	0.289	0.4477	0.00095	0.00167	0.542	-1.0411	-0.0235	-0.3819	-0.842
glpK	675	5	6	0.328	0.493	0.00093	0.00175	0.6262	-1.2043	-0.725	-1.0162	-2.795

^a Size of fragments after alignment and cutting.

^b S, number of polymorphic sites; Hap, number of haplotypes; Hd, haplotype diversity; π, nucleotide diversity per site; θ, average number of nucleotide difference per site; k, average number of nucleotide differences.

^c Statistical analysis of neutrality tests.TajimaD, Tajima’s D test; FuLiD, Fu and Li’s D test; FuLiF, Fu and Li’s F test; FuFs, Fu’s Fs test; Statistically significant was indicated by using

* (P <0.05) and

** (P < 0.02).