Biological Samples |
|
Xenopus laevis oocytes |
Nasco International |
http://www.enasco.com |
|
Chemicals, Peptides, and Recombinant Proteins |
|
1,2-diphytanoyl-sn-glycero-3-phosphocholine |
Avanti Polar Lipids |
Cat. #850356C |
Tetrapentylammonium chloride |
Sigma Aldrich |
Cat. #258962 |
Rubidium chloride |
Sigma Aldrich |
Cat. #215260 |
|
Deposited Data |
|
TREK-2 Down conformation |
Dong et al., 2015 |
PDB: 4XDJ
|
TREK-2 Up conformation |
Dong et al., 2015 |
PDB: 4BW5
|
TREK-2 with norfluoxetine bound |
Dong et al., 2015 |
PDB: 4XDK
|
TWIK-1 |
Miller and Long, 2012 |
PDB: 3UKM
|
TREK-1 |
http://www.thesgc.org/structures/4twk |
PDB: 4TWK
|
|
Experimental Models: Organisms/Strains |
|
Xenopus laevis oocytes |
Nasco International |
http://www.enasco.com |
|
Recombinant DNA |
|
Human TREK-2 (KCNK10) |
Source Bioscience |
IRATp970A05115D |
Human TREK-1 (KCNK2) |
Source Bioscience |
IRATp970F06122D |
|
Software and Algorithms |
|
GROMACS 4.6 |
Hess et al., 2008 |
http://www.gromacs.org/ |
MDAnalysis |
Michaud-Agrawal et al., 2011 |
http://www.mdanalysis.org/ |
UCSF Chimera Dock Prep Tool |
Moustakas et al., 2006 |
https://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/dockprep/dockprep.html |
CGenFF |
Vanommeslaeghe et al., 2010 |
https://cgenff.paramchem.org/ |
CG2AT |
Stansfeld and Sansom, 2011 |
http://memprotmd.bioch.ox.ac.uk/ |