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. 2017 May 4;8:709. doi: 10.3389/fpls.2017.00709

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Copyright © 2017 Malik, Veltri, Boddington, Singh and Graether.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Conservation of the S-segment sequence. (A) LOGO representation of the MEME output of the S-segment. Amino acids are color-coded by their group type. Blue – positively charged (Lys, Arg, His); red – negatively charged (Asp, Glu); black – hydrophobic (Ala, Val, Leu, Ile, Pro, Phe, Met), green – polar (Gly, Ser, Thr, Tyr, Cys), purple – neutral (Asn, Gln). The heights of the amino acids correspond to their conservation at that position. Low probability amino acids may be too short to be seen. (B) PWM of the S-segment sequence. The probability of finding a particular amino acid at a particular position according to the search result. Empty space, p = 0; #, 0 < p < 0.01.