Table 2. Program performances on the GENCODE mouse data sets. Bold-underlined values correspond to the highest values of each metrics. Programs are sorted by MCC values.

MOUSE data set	Program	Sensitivity	Specificity	Precision	Accuracy	F-score	MCC
	FEELnc	0.938	0.941	0.976	0.939	0.956	0.856
	CPAT_train	0.950	0.880	0.952	0.930	0.951	0.828
	CPAT	0.892	0.960	0.982	0.911	0.935	0.806
	CNCI	0.857	0.972	0.987	0.890	0.918	0.772
	CPC	0.744	0.992	0.996	0.815	0.852	0.667
	PLEK	0.710	0.913	0.954	0.768	0.814	0.564
	PLEK_train	0.630	0.891	0.936	0.704	0.753	0.470