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. 2017 May;19(3):397–403. doi: 10.1016/j.jmoldx.2016.11.006

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© 2017 American Society for Investigative Pathology and the Association for Molecular Pathology. Published by Elsevier Inc. All rights reserved.

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Comparison of chromosomal microarray (CMA) and single-nucleotide polymorphism (SNP) quality metrics between blood and saliva DNA. CMA quality was assessed using the derivative log ratio (dLR; Agilent), log R deviation (Illumina), and median absolute pairwise difference (MAPD; Affymetrix), and SNP genotyping quality metrics were assessed using the SNP call rate (Agilent), median B allele frequency (BAF; Illumina), and SNP quality control (snpQC; Affymetrix). Illustrated are box-and-whisker plots of the CMA (A) and SNP (B) quality values for blood and saliva DNA, with medians denoted by horizontal lines and 95th percentiles denoted by vertical lines.