Table 1.
BF vs. BG | FC vs. BG | BF vs. FC | ||||||
---|---|---|---|---|---|---|---|---|
Probeset ID | Entrez gene | Gene symbol | p-value | Fold-change | p-value | Fold-change | p-value | Fold-change |
1451716_at | 16658 | Mafb | 3.70E-05 | −3.35 | 0.80239 | 1.06 | 2.22E-05 | −3.54 |
1452661_at | 22042 | Tfrc | 0.000274 | −2.91 | 0.030046 | −1.74 | 0.042065 | −1.67 |
1419599_s_at | 68774 | Ms4a6d | 0.002668 | −2.67 | 0.011754 | −2.20 | 0.498784 | −1.21 |
1438855_x_at | 21928 | Tnfaip2 | 0.001161 | −2.64 | 0.545691 | −1.17 | 0.004421 | −2.26 |
1427256_at | 13003 | Vcan | 2.86E-05 | −2.49 | 0.019029 | −1.52 | 0.00704 | −1.64 |
1460208_at | 14118 | Fbn1 | 0.004033 | −2.36 | 0.070378 | −1.65 | 0.182047 | −1.43 |
1421583_at | 12912 | Creb1 | 0.004128 | −2.34 | 0.329644 | −1.29 | 0.033861 | −1.81 |
1421694_a_at | 13003 | Vcan | 1.60E-05 | −2.30 | 0.000262 | −1.90 | 0.192589 | −1.21 |
1428112_at | 74840 | Manf | 4.68E-06 | −2.24 | 0.00036 | −1.72 | 0.047102 | −1.30 |
1449037_at | 12916 | Crem | 0.000264 | −2.23 | 0.014286 | −1.61 | 0.081056 | −1.38 |
1422529_s_at | 12373 | Casq2 | 0.000149 | −2.21 | 0.000655 | −1.97 | 0.498468 | −1.12 |
1418826_at | 69774 | Ms4a6b | 0.003911 | −2.18 | 0.022244 | −1.80 | 0.422954 | −1.21 |
1449461_at | 63954 | Rbp7 | 0.004209 | −2.18 | 0.402653 | −1.22 | 0.025728 | −1.78 |
1450843_a_at | 12406 | Serpinh1 | 0.000299 | −2.15 | 0.065647 | −1.40 | 0.020373 | −1.54 |
1448259_at | 14314 | Fstl1 | 0.001288 | −2.14 | 0.322366 | −1.22 | 0.011567 | −1.75 |
1422967_a_at | 22042 | Tfrc | 0.00107 | −2.12 | 0.00023 | −2.43 | 0.484369 | 1.15 |
1456733_x_at | 12406 | Serpinh1 | 0.001236 | −2.03 | 0.127213 | −1.34 | 0.036967 | −1.51 |
1426464_at | 217166 | Nr1d1 | 0.003783 | −2.03 | 0.010649 | −1.83 | 0.63518 | −1.11 |
1434923_at | 68033 | Cox19 | 5.50E-07 | −2.01 | 0.000198 | −1.53 | 0.007355 | −1.31 |
1422768_at | 56403 | Syncrip | 1.62E-05 | 2.00 | 0.000225 | 1.73 | 0.217858 | 1.16 |
1423269_a_at | 83814 | Nedd4l | 0.000355 | 2.01 | 0.005813 | 1.64 | 0.213553 | 1.22 |
1450747_at | 50868 | Keap1 | 2.91E-05 | 2.02 | 0.255532 | 1.16 | 0.000338 | 1.74 |
1418146_a_at | 19651 | Rbl2 | 0.000403 | 2.03 | 0.480517 | 1.12 | 0.001918 | 1.80 |
1434150_a_at | 70152 /// 393082 | Mettl7a1 Mettl7a2 | 1.40E-05 | 2.03 | 0.022879 | 1.34 | 0.00268 | 1.51 |
1453988_a_at | 15925 | Ide | 0.000412 | 2.03 | 0.638871 | −1.08 | 0.000149 | 2.20 |
1419301_at | 14366 | Fzd4 | 0.000254 | 2.04 | 0.080389 | 1.33 | 0.013902 | 1.53 |
1432646_a_at | 347740 | 2900097C17Rik | 1.08E-06 | 2.05 | 0.342346 | −1.10 | 2.01E-07 | 2.26 |
1417061_at | 53945 | Slc40a1 | 5.04E-05 | 2.07 | 0.025295 | 1.39 | 0.009503 | 1.48 |
1423953_at | 68916 | Cdkal1 | 1.93E-06 | 2.10 | 0.117263 | −1.19 | 1.13E-07 | 2.49 |
1415773_at | 17975 | Ncl | 2.48E-05 | 2.11 | 0.32501 | 1.14 | 0.000201 | 1.85 |
1449405_at | 21961 | Tns1 | 3.17E-06 | 2.11 | 0.020294 | 1.32 | 0.000568 | 1.59 |
1449005_at | 80879 | Slc16a3 | 0.001438 | 2.11 | 0.054044 | 1.50 | 0.102055 | 1.40 |
1431213_a_at | 100041932 | Gm3579 | 0.001169 | 2.12 | 0.408605 | 1.18 | 0.007302 | 1.80 |
1422286_a_at | 21815 | Tgif1 | 2.34E-05 | 2.12 | 0.309256 | 1.15 | 0.000204 | 1.85 |
1451020_at | 56637 | Gsk3b | 8.27E-06 | 2.13 | 0.036157 | 1.32 | 0.000913 | 1.62 |
1417611_at | 170706 | Tmem37 | 0.000781 | 2.13 | 0.654402 | −1.09 | 0.000293 | 2.32 |
1422997_s_at | 26897 /// 171210 | Acot1 /// Acot2 | 0.000628 | 2.14 | 0.108529 | −1.36 | 1.84E-05 | 2.92 |
1417409_at | 16476 | Jun | 5.39E-05 | 2.15 | 0.035148 | 1.39 | 0.007188 | 1.55 |
1423233_at | 12609 | Cebpd | 0.002984 | 2.15 | 0.601471 | −1.12 | 0.00094 | 2.41 |
1422847_a_at | 18753 | Prkcd | 0.000377 | 2.16 | 0.233831 | 1.24 | 0.005448 | 1.74 |
1431320_a_at | 17918 | Myo5a | 0.00029 | 2.17 | 0.792485 | 1.05 | 0.000514 | 2.07 |
1427844_a_at | 12608 | Cebpb | 6.68E-06 | 2.17 | 0.640688 | −1.06 | 2.73E-06 | 2.30 |
1433711_s_at | 140742 | Sesn1 | 2.03E-07 | 2.18 | 0.564539 | 1.06 | 5.49E-07 | 2.06 |
1425745_a_at | 57752 | Tacc2 | 4.48E-07 | 2.18 | 0.003064 | 1.41 | 0.000366 | 1.55 |
1456080_a_at | 26943 | Serinc3 | 0.001568 | 2.18 | 0.242556 | −1.29 | 0.000117 | 2.80 |
1452082_at | 234797 | 6430548M08Rik | 3.14E-08 | 2.18 | 0.046032 | −1.19 | 1.52E-09 | 2.60 |
1416617_at | 68738 | Acss1 | 0.000348 | 2.19 | 0.021219 | 1.56 | 0.072344 | 1.40 |
1454699_at | 140742 | Sesn1 | 6.86E-05 | 2.19 | 0.577294 | −1.09 | 2.16E-05 | 2.39 |
1420973_at | 71371 | Arid5b | 1.13E-05 | 2.20 | 0.004402 | 1.52 | 0.011325 | 1.44 |
1431697_at | 20975 | Synj2 | 1.26E-05 | 2.21 | 0.989386 | −1.00 | 1.23E-05 | 2.21 |
1417290_at | 76905 | Lrg1 | 0.000307 | 2.21 | 0.799724 | 1.05 | 0.000533 | 2.11 |
1425384_a_at | 140630 | Ube4a | 1.40E-06 | 2.21 | 0.316461 | 1.12 | 9.68E-06 | 1.98 |
1427131_s_at | 320184 | Lrrc58 | 4.95E-05 | 2.22 | 0.559443 | 1.09 | 0.000171 | 2.03 |
1419448_at | 57915 | Tbc1d1 | 7.25E-07 | 2.23 | 0.004296 | 1.41 | 0.000474 | 1.57 |
1438931_s_at | 140742 | Sesn1 | 0.000307 | 2.24 | 0.501495 | 1.13 | 0.001353 | 1.98 |
1455892_x_at | 1.94E-05 | 2.29 | 0.284654 | 1.17 | 0.000188 | 1.96 | ||
1425514_at | 18708 | Pik3r1 | 0.001526 | 2.30 | 0.342072 | 1.24 | 0.012489 | 1.85 |
1426446_at | 234797 | 6430548M08Rik | 3.59E-06 | 2.32 | 0.302904 | −1.14 | 5.30E-07 | 2.65 |
1424638_at | 12575 | Cdkn1a | 0.000231 | 2.34 | 0.118787 | −1.35 | 8.16E-06 | 3.16 |
1449311_at | 12013 | Bach1 | 6.06E-06 | 2.34 | 0.003171 | 1.57 | 0.007878 | 1.49 |
1423086_at | 18145 | Npc1 | 4.63E-08 | 2.38 | 0.225594 | 1.12 | 3.56E-07 | 2.11 |
1417563_at | 13685 | Eif4ebp1 | 4.14E-07 | 2.39 | 0.071658 | 1.23 | 1.42E-05 | 1.93 |
1419447_s_at | 57915 | Tbc1d1 | 1.51E-05 | 2.41 | 0.000777 | 1.82 | 0.075419 | 1.32 |
1425515_at | 18708 | Pik3r1 | 0.000605 | 2.43 | 0.605949 | 1.12 | 0.00189 | 2.17 |
1421679_a_at | 12575 | Cdkn1a | 0.00021 | 2.44 | 0.104343 | −1.39 | 6.51E-06 | 3.38 |
1450703_at | 11988 | Slc7a2 | 2.10E-05 | 2.48 | 0.818778 | 1.04 | 3.36E-05 | 2.39 |
1417623_at | 20496 | Slc12a2 | 0.000126 | 2.49 | 0.007085 | 1.76 | 0.078497 | 1.41 |
1433725_at | 11479 | Acvr1b | 6.23E-06 | 2.49 | 0.000635 | 1.81 | 0.037663 | 1.38 |
1422565_s_at | 18029 | Nfic | 8.26E-05 | 2.49 | 0.040319 | 1.48 | 0.009631 | 1.68 |
1451285_at | 233908 | Fus | 1.61E-07 | 2.49 | 0.029668 | 1.29 | 1.14E-05 | 1.93 |
1421321_a_at | 56349 | Net1 | 0.000152 | 2.50 | 0.153148 | −1.33 | 7.40E-06 | 3.31 |
1448780_at | 20496 | Slc12a2 | 8.91E-05 | 2.51 | 0.00241 | 1.90 | 0.142167 | 1.32 |
1416332_at | 12696 | Cirbp | 4.12E-05 | 2.63 | 0.000551 | 2.12 | 0.234157 | 1.24 |
1422648_at | 11988 | Slc7a2 | 5.22E-05 | 2.66 | 0.049873 | 1.47 | 0.004744 | 1.81 |
1451382_at | 69065 | Chac1 | 0.000401 | 2.66 | 0.009432 | 1.92 | 0.16174 | 1.39 |
1419446_at | 57915 | Tbc1d1 | 5.79E-06 | 2.72 | 0.028562 | 1.45 | 0.000788 | 1.88 |
1416125_at | 14229 | Fkbp5 | 4.92E-07 | 2.81 | 0.158763 | 1.21 | 7.24E-06 | 2.31 |
1427035_at | 213053 | Slc39a14 | 3.52E-07 | 2.85 | 0.002438 | 1.59 | 0.000339 | 1.79 |
1427339_at | 230810 | Slc30a2 | 0.000124 | 2.87 | 0.060195 | 1.54 | 0.009373 | 1.87 |
1424354_at | 68487 | Tmem140 | 6.50E-07 | 2.94 | 0.549542 | −1.09 | 2.29E-07 | 3.20 |
1422996_at | 171210 | Acot2 | 2.27E-05 | 3.01 | 0.521089 | −1.13 | 6.29E-06 | 3.41 |
1452416_at | 16194 | Il6ra | 1.63E-07 | 3.04 | 0.005239 | 1.52 | 6.10E-05 | 2.00 |
1425060_s_at | 56430 | Clip1 | 3.43E-05 | 3.20 | 0.005692 | 1.94 | 0.028004 | 1.65 |
1448231_at | 14229 | Fkbp5 | 1.03E-06 | 3.21 | 0.806432 | −1.04 | 6.61E-07 | 3.33 |
1419754_at | 17918 | Myo5a | 0.000219 | 3.31 | 0.888517 | 1.04 | 0.000296 | 3.19 |
1448747_at | 67731 | Fbxo32 | 3.64E-09 | 4.50 | 0.121024 | 1.25 | 3.85E-08 | 3.60 |
1450606_at | 18948 | Pnmt | 6.42E-08 | 4.56 | 0.61962 | 1.09 | 1.44E-07 | 4.19 |
1417522_at | 67731 | Fbxo32 | 1.23E-07 | 5.14 | 0.525366 | 1.13 | 3.60E-07 | 4.55 |
1427747_a_at | 16819 | Lcn2 | 1.02E-07 | 11.06 | 0.089068 | −1.64 | 6.76E-09 | 18.13 |
Complete list of genes found differentially regulated in longissimus dorsi of BF vs. BG mice, meeting FDR < 0.05 and fold change < −2 and > +2 criteria.