Table 1.
Primers used for sequencing of full-length genome of UPO216 virus in this study.
| Name | Sequences (3′ → 5′) | Size (bp) | Usage |
|---|---|---|---|
| 53F | CGYACGGGTAGAAGGTGTGA | 20 | Sequensing |
| 1561F | AGGCAACCAAGACCAGGATCAGG | 23 | Sequensing |
| 1814R | CTTCTACCCGTAYTTTTTTCTA | 22 | Sequensing |
| 2223F | ATACGGACAGGTGCGAGCTC | 20 | Sequensing |
| 2921F | AGTGAAGGCTAGTCAGGCGC | 20 | Sequensing |
| 3257F | TAAGAAAAAATACGGGTAGAAT | 22 | Sequensing |
| 4138R | TGAAGGGCCGAGAACATC | 18 | Sequensing |
| 4520R | CTTCTACCCGTGTTTTTTCTAA | 22 | Sequensing |
| 4541F | TCTGCCCTCCTTTGATAATCCAA | 23 | Sequensing |
| 4885F | GACCGAAACAGCAGGATTAGTTCAGG | 26 | Sequensing |
| 4896R | GCTGTTTCGGTCGTTGACTCGTGTAT | 26 | Sequensing |
| 5274R | TGAATACTGAGTGGACTAAGAGCCGGA | 27 | Sequensing |
| 5623F | CTTCCCTATGTCTCCAGG | 18 | Sequensing |
| 6116F | TCTCCTGTGACAGGTAGTAG | 20 | Sequensing |
| 6654F | YCAAGATGTCRTAGATAGG | 19 | Sequensing |
| 7668R | CTCCAATGTGCATGACTC | 18 | Sequensing |
| 8210F | TGATGCCATCGCAGAACCCC | 20 | Sequensing |
| 8401R | GCYYGCCATGTCCTACCCGT | 20 | Sequensing |
| 8943F | ACAGCTCCAGCGACATTT | 18 | Sequensing |
| 9095F | TTGATGTATGCRGATATGAT | 20 | Sequensing |
| 9773F | ACTTCGACCCAGTCTCAA | 18 | Sequensing |
| 10524R | ACGATRTATATGTCATCATT | 20 | Sequensing |
| 10578F | GACAATGATTTCCATATCTG | 20 | Sequensing |
| 12201R | TTCCTGCTGTTGGGAGCGGT | 20 | Sequensing |
| 12932R | GATATGGTTGCTGCTATG | 18 | Sequensing |
| 13788R | GCGGCACATGCAACTCTA | 18 | Sequensing |
| 14240F | MGAGGRGATATGGAGTGTTA | 20 | Sequensing |
| 14459R | TAAGCCCTGGGGTGGGTAGA | 20 | Sequensing |
| 15179R | ACCAAACARAGATTTGGTGA | 20 | Sequensing |
| 398R1 | GTCCAGCTAGGGCAACAT | 18 | 3′RACE |
| 303R2 | CTAACTGCCACTCTGAGG | 18 | 3′RACE |
| 14325PF | phospho-AGGTGGTGAGGATGGCGAAG | 28 | 5′RACE |
| 14862F1 | GGAGCACCTGCCCAAAATA | 19 | 5′RACE |
| 14652R1 | GCTAGTGCACCGCCTTCTT | 19 | 5′RACE |
| 14979F2 | TTATCGGGAATGCAATCAAAG | 21 | 5′RACE |
| 14618R2 | ATCTAATGGCAGTATCTATGTGG | 23 | 5′RACE |