Table 1. Comparison of basic sequence statistics of R498 and Nipponbare MSU7.
| Chr | R498 Len | Nip Len | R498 Gaps* | Nip Gaps† | R498 Tel | Nip Tel |
|---|---|---|---|---|---|---|
| Chr1 | 44,361,539 | 43,270,923 | 1 | 12 | Both | Single |
| Chr2 | 37,764,328 | 35,937,250 | 1 | 6 | Both | Both |
| Chr3 | 39,691,490 | 36,413,819 | 1 | 12 | Both | Both |
| Chr4 | 35,849,732 | 35,502,694 | 0 | 46 | Both | Both |
| Chr5 | 31,237,231 | 29,958,434 | 0 | 14 | Both | Single |
| Chr6 | 32,465,040 | 31,248,787 | 0 | 5 | Both | Single |
| Chr7 | 30,277,827 | 29,697,621 | 1 | 9 | Both | Both |
| Chr8 | 29,952,003 | 28,443,022 | 0 | 3 | Both | Single |
| Chr9 | 24,760,661 | 23,012,720 | 0 | 18 | Both | None |
| Chr10 | 25,582,588 | 23,207,287 | 0 | 28 | Both | Single |
| Chr11 | 31,778,392 | 29,021,106 | 1 | 69 | Both | None |
| Chr12 | 26,601,357 | 27,531,856 | 0 | 17 | Both | None |
| mtDNA | 527,116 | 490,520 | 0 | 0 | — | — |
| cpDNA | 134,546 | 134,525 | 0 | 0 | — | — |
| Total** | 390,983,850 | 373,870,564 | 5 | 239 | 24 | 13 |
Chr, chromosome; Len, length; Nip, Nipponbare; Tel, telomere.
**R498 GC content, 43.57%; Nip GC content, 43.53%.
*R498 centromere gap locations: chr1, 17,339,881–17,349,880; chr2, 13,684,078–13,694,077; chr3, 21,193,261–21,203,260; chr7, 12,695,696–12,705,695; chr11, 13,162,594–13,172,593. More potential duplication gaps are listed in Supplementary Table 3.
†The gaps in Nip are those at least 100 bp.