Table 2. Comparison of genome features between R498 and Nipponbare MSU7.
| Feature type | In R498 | In Nip | |
|---|---|---|---|
| Gene | |||
| Number | 38,714 | 36,775 | |
| Repeat content | |||
| % | 42.05 | 40.43 | |
| SNP | |||
| Number | 2,548,071 | 2,548,071 | |
| Insertion of 1–99 bp | |||
| Number | 226,771 | 239,390 | |
| Base | 1,034,898 | 1,077,080 | |
| PV of 100–499 bp | |||
| Number | 3,432 | 3,411 | |
| Base | 887,602 | 856,902 | |
| PV of 500–999 bp | |||
| Number | 1,301 | 1,328 | |
| Base | 938,805 | 962,372 | |
| PV of ≥1–10 kb | |||
| Number | 5,407 | 4,973 | |
| Base | 19,316,383 | 16,710,125 | |
| PV of ≥10–50 kb | |||
| Number | 1,524 | 726 | |
| Base | 28,857,940 | 13,663,983 | |
| PV of ≥50 kb | |||
| Number | 170 | 92 | |
| Base | 16,851,530 | 7,960,212 | |
| PV of ≥500 bp | |||
| Number | 8,402 | 7,119 | |
| Base | 65,964,658 | 39,296,692 |
AV, absence variation; PV, presence variation; SNP, single-nucleotide polymorphism.
An insertion in R498 is equivalent to a deletion in Nip, and vice versa. A PV in R498 is equivalent to an AV in Nip, and vice versa.