Table 2.
Summary of gene expression and significant differential expression (DE) in pair-wise comparisons of proliferating cells
| Comparison | Groups | Total expressed genes | Shared genes | Unique Genes in each group | FDR < 0.05 | |Log2FC| > 1.0 |
|Log2FC| > 2.0 |
|---|---|---|---|---|---|---|---|
| Cold | 33R v 38R | 15341 | 14248 | 817/276 | 8826 | 2746 (0.650) | 676 (0.782) |
| 33F v 38F | 15457 | 14220 | 871/366 | 8727 | 3151 (0.693) | 1048 (0.768) | |
| Hot | 43R v 38R | 14896 | 13869 | 372/655 | 1916 | 1028 (0.459) | 264 (0.417) |
| 43F v 38F | 15238 | 14119 | 652/467 | 4596 | 1386 (0.674) | 495 (0.770) | |
| Line | |||||||
| 33F v 33R | 15518 | 14638 | 453/427 | 2092 | 412 (0.464) | 114 (0.403) | |
| 38F v 38R | 14973 | 14137 | 449/387 | 2122 | 263 (0.319) | 72 (0.250) | |
| 43F v 43R | 15050 | 13962 | 809/279 | 1172 | 784 (0.764) | 320 (0.859) |
For each comparison of the treatment groups (Temperature, 33°, 38° or 43 °C/Line, RBC2 or F), the total number of expressed and uniquely expressed genes, number of genes with significant FDR p-value, and the numbers of significant genes also with |Log2 fold change| >1.0 and >2.0 are given. Only those genes with treatment group mean normalized read counts >3.0 are included as expressed. Numbers in parentheses equal the proportion of up-regulated genes