Table 2.
Summary of the SNPs with a genotyping rate of homozygous sites less than 50%
| Group | Genotype ID | Assembled sequence (bp) | Total SNPs | Heterozygous SNPs | Homozygous SNPs | Total SNPs per kb | Heterozygous SNPs number per Kb | Homozygous SNPs per Kb |
|---|---|---|---|---|---|---|---|---|
| Wild | AL_W | 7645931 | 77745 | 15124 | 62621 | 10.17 | 1.98 | 8.19 |
| BD_W | 2107974 | 20324 | 2441 | 17883 | 9.64 | 1.16 | 8.48 | |
| BJ_W | 6828806 | 71837 | 13911 | 57926 | 10.52 | 2.04 | 8.48 | |
| HZ_W | 7063593 | 72665 | 12810 | 59855 | 10.29 | 1.81 | 8.47 | |
| LC_W | 6755448 | 69772 | 14319 | 55453 | 10.33 | 2.12 | 8.21 | |
| MT_W | 6693879 | 69792 | 15421 | 54371 | 10.43 | 2.30 | 8.12 | |
| SM_W | 7406774 | 72054 | 18028 | 54026 | 9.73 | 2.43 | 7.29 | |
| TS_W | 7802112 | 78502 | 16920 | 61582 | 10.06 | 2.17 | 7.89 | |
| WF_W | 7105355 | 72840 | 13639 | 59201 | 10.25 | 1.92 | 8.33 | |
| Average | 6601097 | 672812 | 13624 | 53658 | 10.16 | 1.99 | 8.16 | |
| Cultivated | Algeria_C | 6734550 | 69033 | 17950 | 51083 | 10.25 | 2.67 | 7.59 |
| Biano_C | 6378374 | 65886 | 13780 | 52106 | 10.33 | 2.16 | 8.17 | |
| BY_C | 7509796 | 76407 | 15521 | 60886 | 10.17 | 2.07 | 8.11 | |
| DWX_C | 7191808 | 74136 | 13487 | 60649 | 10.31 | 1.88 | 8.43 | |
| MBC_C | 7473459 | 74392 | 17565 | 56827 | 9.95 | 2.35 | 7.60 | |
| MM_C | 7170711 | 73359 | 18597 | 54762 | 10.23 | 2.60 | 7.64 | |
| RTBS_C | 6740816 | 55532 | 2993 | 52539 | 8.24 | 0.44 | 7.79 | |
| SJPP_C | 7199676 | 73112 | 15336 | 57776 | 10.15 | 2.13 | 8.02 | |
| YN_C | 7668847 | 75122 | 13710 | 61412 | 9.80 | 1.79 | 8.01 | |
| ZZ6H_C | 7310710 | 72836 | 14474 | 58362 | 9.96 | 1.98 | 7.98 | |
| Average | 7137875 | 70982 | 14341 | 56640 | 9.94 | 2.01 | 7.93 | |
| Total | Mean | 6883612 | 69229 | 14001 | 55227 | 10.04 | 2.00 | 8.04 |
See Table 6 for genotypes detail