Table 1. List of strains used for phylogenetic analysis of S. enterica genomes.
| Strain | Serovar | Source Type | Accession no. | Sequence type |
|---|---|---|---|---|
| ST221_31B* | Typhimurium | Processed whole chicken carcass | JUIT01000000 | ST-19 |
| LT2 | Typhimurium | Human | AE006468 | ST-19 |
| CVM23701 (SL474) | I 4,_5_,12:i:_ | Human | ABAO00000000 | ST-19 |
| SK222_32B* | Kentucky | Processed whole chicken carcass | JUIU01000000 | ST-152 |
| CDC 191 (SL479) | Kentucky | Human | ABEI00000000 | ST-152 |
| CVM29188 (SL475) | Kentucky | Chicken breast | ABAK00000000 | ST-152 |
| SL483 | Agona | Human | CP001138 | ST-13 |
| SL477 | Dublin | Human | CP001144 | ST-10 |
| RI_05P066 (SL485) | Hadar | Human | ABFG00000000 | ST-33 |
| SL476 | Heidelberg | Ground turkey | CP001120 | ST-15 |
| SL486 | Heidelberg | Human | ABEL00000000 | ST-15 |
| SL474 | I 4,_5_,12:i:_ | Human | ABAO00000000 | ST-19 |
| SL478 | Javiana | Human | ABEH00000000 | ST-24 |
| SL254 | Newport | Human | CP001113 | ST-45 |
| SL317 | Newport | Human | ABEW00000000 | ST-5 |
| SARA23 | Saintpaul | Human | ABAM00000000 | ST-50 |
| SARA29 | Saintpaul | Human | ABAN00000000 | ST-95 |
| CVM19633 (SL473) | Schwarzengrund | Dehydrated chili | CP001127 | ST-322 |
| SL480 | Schwarzengrund | Human | ABEJ00000000 | ST-322 |
| SL491 | Virchow | Human | ABFH00000000 | ST-16 |
| HI_N05-537 (SL484) | Weltevreden | Scallops | ABFF00000000 | ST-365 |
| RKS2980 | 62:z4,z23: | NA | CP000880 | NA |
| SC-B67 | Choleraesuis | Human | AE017220 | ST-66 |
| P125109 | Enteritidis | Human | AM933172 | ST-11 |
| 287/91 | Gallinarum | Chicken | AM933173 | ST-331 |
| AKU_12601 | Paratyphi A | Human | CP000026 | ST-85 |
| ATCC 9150 | Paratyphi A | Laboratory strain | CP000026 | ST-85 |
| SPB7 | Paratyphi B | Human | CP000886 | ST-307 |
| RKS4594 | Paratyphi C | Human | CP000857 | ST-114 |
| CT18 | Typhi | Human | AE014613 | ST-2 |
| Ty2 | Typhi | NA | AE014613 | ST-1 |
*Strains sequenced in this study; NA, not available.