Table 2. Oligonucleotides used in this study.
Name | Sequence (5′ → 3′)a | Purpose |
---|---|---|
OHS753 | ATGTCTCCCAGACCACCAAGTATC | 5′ vadA probe |
OHS754 | GGCTTGAGCTTGGATATGAACCG | 3′ vadA probe |
OHS859 | GTGGTTGCTAGTCCGCAGAGAG | 5′ flanking region of vadA |
OHS860 | GCTGGGTCAAACAAGCCAGTGC | 3′ flanking region of vadA |
OHS861 | GGCTTTGGCCTGTATCATGACTTCA GGAGGCCGTAGTAGAGTGAAAGATG | 5′ vadA with AfupyrG tail |
OHS862 | TTTGGTGACGACAATACCTCCCGAC CGACGAGCTGTATGCCTTCATG | 3′ vadA with AfupyrG tail |
OHS863 | CTGGGTGGAGAGGCTAACTGC | 5′ nested of vadA |
OHS864 | ACTCCAGCGCATTATCCAACTCAG | 3′ nested of vadA |
OHS887 | ATATGAATTCATGTCTCCCAGACCACCAAGTATC | 5′ vadA with EcoRI |
OHS888 | ATATGAATTCTGCTCCTGGTAAGAAATGCTCG | 5′ vadA with pro and EcoRI |
OHS889 | ATATGCGGCCGCCAAGTTAGTGATGTACTCTTTCATATCC | 3′ vadA with NotI |
OJH84 | GCTGAAGTCATGATACAGGCCAAA | 5′ AfupyrG marker |
OJH85 | ATCGTCGGGAGGTATTGTCGTCAC | 3′ AfupyrG marker |
OJA142 | CTGGCAGGTGAACAAGTC | 5′ brlA probe |
OJA143 | AGAAGTTAACACCGTAGA | 3′ brlA probe |
OJA150 | CAGTACGTCAATATGGAC | 5′ wetA probe |
OJA151 | GTGAAGTTGACAAACGAC | 3′ wetA probe |
OJA156 | ATGCTATATTCACCACCT | 5′ rodA probe |
OJA157 | TGACCTACCAGAATATCG | 3′ rodA probe |
OMN66 | TTTCCAGATCCTTCGCAG | 5′ vosA probe |
OMN63 | ATAGAAACAGCCACCCAG | 3′ vosA probe |
OMN125 | TATGCACTGGCACTCAAGCAACCG | 5′ velB probe |
OMN126 | GTGCATGACGGTCGTATCTGGTCC | 3′ velB probe |
OMN143 | ACTTATGCCAACGTTCTGCG | 5′ fksA probe |
OMN144 | AAAGAGCGGGCAGCATAATG | 3′ fksA probe |
OMN176 | CCATCACCATAAAGCGATCAG | 5′ tpsA probe |
OMN177 | CAGTTTCGAGAAGTTAAGCGC | 3′ tpsA probe |
OMN182 | CAGCCGCATCTCCAACTTAG | 5′ orlA probe |
OMN183 | TGTTAGCAGCAATTCATGGCG | 3′ orlA probe |
a Tail sequences are shown in italics. Restriction enzyme sites are in bold.