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. 2017 May 8;12(5):e0177099. doi: 10.1371/journal.pone.0177099

Table 2. Oligonucleotides used in this study.

Name Sequence (5′ → 3′)a Purpose
OHS753 ATGTCTCCCAGACCACCAAGTATC 5′ vadA probe
OHS754 GGCTTGAGCTTGGATATGAACCG 3′ vadA probe
OHS859 GTGGTTGCTAGTCCGCAGAGAG 5′ flanking region of vadA
OHS860 GCTGGGTCAAACAAGCCAGTGC 3′ flanking region of vadA
OHS861 GGCTTTGGCCTGTATCATGACTTCA GGAGGCCGTAGTAGAGTGAAAGATG 5′ vadA with AfupyrG tail
OHS862 TTTGGTGACGACAATACCTCCCGAC CGACGAGCTGTATGCCTTCATG 3′ vadA with AfupyrG tail
OHS863 CTGGGTGGAGAGGCTAACTGC 5′ nested of vadA
OHS864 ACTCCAGCGCATTATCCAACTCAG 3′ nested of vadA
OHS887 ATATGAATTCATGTCTCCCAGACCACCAAGTATC 5′ vadA with EcoRI
OHS888 ATATGAATTCTGCTCCTGGTAAGAAATGCTCG 5′ vadA with pro and EcoRI
OHS889 ATATGCGGCCGCCAAGTTAGTGATGTACTCTTTCATATCC 3′ vadA with NotI
OJH84 GCTGAAGTCATGATACAGGCCAAA 5′ AfupyrG marker
OJH85 ATCGTCGGGAGGTATTGTCGTCAC 3′ AfupyrG marker
OJA142 CTGGCAGGTGAACAAGTC 5′ brlA probe
OJA143 AGAAGTTAACACCGTAGA 3′ brlA probe
OJA150 CAGTACGTCAATATGGAC 5′ wetA probe
OJA151 GTGAAGTTGACAAACGAC 3′ wetA probe
OJA156 ATGCTATATTCACCACCT 5′ rodA probe
OJA157 TGACCTACCAGAATATCG 3′ rodA probe
OMN66 TTTCCAGATCCTTCGCAG 5′ vosA probe
OMN63 ATAGAAACAGCCACCCAG 3′ vosA probe
OMN125 TATGCACTGGCACTCAAGCAACCG 5′ velB probe
OMN126 GTGCATGACGGTCGTATCTGGTCC 3′ velB probe
OMN143 ACTTATGCCAACGTTCTGCG 5′ fksA probe
OMN144 AAAGAGCGGGCAGCATAATG 3′ fksA probe
OMN176 CCATCACCATAAAGCGATCAG 5′ tpsA probe
OMN177 CAGTTTCGAGAAGTTAAGCGC 3′ tpsA probe
OMN182 CAGCCGCATCTCCAACTTAG 5′ orlA probe
OMN183 TGTTAGCAGCAATTCATGGCG 3′ orlA probe

a Tail sequences are shown in italics. Restriction enzyme sites are in bold.