Table 2.

Most abundant transcripts by read count in larvae.

Transcript ID	FPKM of adult	FPKM of larvae	Fold change a/l	Description	Stat	P-values
AAEL018672	9,254	60,002	0.15	No protein	−6.25	0.00
AAEL010789	37	40,445	0.00	Hypothetical protein	−43.37	0.00
AAEL001107	2,312	30,576	0.08	Hypothetical protein	−14.67	0.00
AAEL012645	5	27,327	0.00	Hypothetical protein	−43.77	0.00
AAEL017051	21	23,711	0.00	Trypsin-like cysteine/serine peptidase domain	−20.67	0.00
AAEL005849	3,050	18,649	0.16	Synaptic vesicle protein	−8.30	0.00
AAEL017413	5,081	16,268	0.31	Unknown protein	−6.93	0.00
AAEL017090	2	14,502	0.00	Unknown protein	−26.68	0.00
AAEL018662	7,982	12,573	0.63	Cytochrome c oxidase subunit I	−3.05	0.00
AAEL013777	2	11,037	0.00	Hypothetical protein	−32.21	0.00
AAEL017119	2,941	10,761	0.27	Unknown protein	−7.59	0.00
AAEL010675	2,281	10,496	0.22	Hypothetical protein	−8.49	0.00
AAEL002612	22	10,365	0.00	Hypothetical protein	−36.44	0.00
AAEL011557	44	10,324	0.00	Metalloproteinase, putative	−33.02	0.00
AAEL018673	1,778	10,149	0.18	Unknown protein	−4.54	0.00
AAEL004851	9,765	9,948	0.98	Hypothetical protein	−0.10	0.89
AAEL018674	982	8,736	0.11	Unknown protein	−4.59	0.00
AAEL004522	1,309	8,632	0.15	Hypothetical protein	−10.46	0.00
AAEL017096	4,359	8,128	0.54	Unknown protein	−4.14	0.00
AAEL002631	1	7,889	0.00	Hypothetical protein	−24.38	0.00

The top 20 most highly expressed transcripts in A. aegypti larval MTs with adult expression levels for comparison purposes. Generated by Cuffdiff.