Table 2.
Non-synonymous (Ka) and synonymous (Ks) nucleotide substitution rates for Arabidopsis thaliana and B. napus VOC gene coding loci.
| A. thaliana ID | B. napus gene | B. napus ID | VOC family | Ka | Ks | Ka/Ks |
|---|---|---|---|---|---|---|
| ONE COPY LOCI | ||||||
| AT5G41650 | BnaGLYI31 | BnaA09g11460D | Glyoxalase | 0.1318 | 0.0949 | 0.7202 |
| TWO-COPY LOCI | ||||||
| AT1G67280 | BnaGLYI25 | BnaC06g28360D | Glyoxalase | 0.1413 | 0.0598 | 0.4232 |
| BnaGLYI26 | BnaA07g26290D | Glyoxalase | 0.1499 | 0.0605 | 0.4039 | |
| AT2G28420 | BnaGLYI27 | BnaC04g15790D | Glyoxalase | 0.3604 | 0.2398 | 0.6654 |
| BnaGLYI28 | BnaA07g13890D | Glyoxalase | 0.3669 | 0.2534 | 0.6907 | |
| AT2G32090 | BnaGLYI29 | BnaA05g35240D | Glyoxalase | 0.0607 | 0.0328 | 0.5402 |
| BnaGLYI30 | BnaCnng59150D | Glyoxalase | 0.071 | 0.0327 | 0.4612 | |
| THREE-COPY LOCI | ||||||
| AT1G64185 | BnaGLYI22 | BnaC09g12330D | Glyoxalase | 0.0669 | 0.0306 | 0.4579 |
| BnaGLYI23 | BnaA09g12000D | Glyoxalase | 0.0829 | 0.0346 | 0.417 | |
| BnaGLYI24 | BnaC09g11920D | Glyoxalase | 0.0745 | 0.0386 | 0.5178 | |
| AT5G57040 | BnaGLYI32 | BnaA10g11070D | Glyoxalase | 0.1294 | 0.0564 | 0.4361 |
| BnaGLYI33 | BnaC03g13130D | Glyoxalase | 0.1193 | 0.0599 | 0.5023 | |
| BnaGLYI34 | BnaA03g10440D | Glyoxalase | 0.1183 | 0.0649 | 0.5486 | |
| FOUR-COPY LOCI | ||||||
| AT1G07645 | BnaGLYI1 | BnaA09g49270D | Glyoxalase | 0.0534 | 0.0274 | 0.5133 |
| BnaGLYI2 | BnaA06g04170D | Glyoxalase | 0.0963 | 0.0494 | 0.5124 | |
| BnaGLYI3 | BnaC05g05340D | Glyoxalase | 0.1078 | 0.0493 | 0.4571 | |
| BnaGLYI4 | BnaCnng38880D | Glyoxalase | 0.0606 | 0.0291 | 0.4807 | |
| AT1G08110 | BnaGLYI5 | BnaC05g05770D | Glyoxalase | 0.0491 | 0.0206 | 0.4196 |
| BnaGLYI6 | BnaA06g04580D | Glyoxalase | 0.0546 | 0.0206 | 0.3771 | |
| BnaGLYI7 | BnaC03g51010D | Glyoxalase | 0.4269 | 0.2508 | 0.5874 | |
| BnaGLYI8 | BnaCnng47290D | Glyoxalase | 0.1701 | 0.0679 | 0.3992 | |
| AT1G11840 | BnaGLYI9 | BnaC08g15100D | Glyoxalase | 0.0986 | 0.0341 | 0.3459 |
| BnaGLYI10 | BnaA08g25110D | Glyoxalase | 0.0357 | 0.0056 | 0.1561 | |
| BnaGLYI11 | BnaC05g08770D | Glyoxalase | 0.4815 | 0.1503 | 0.312 | |
| BnaGLYI12 | BnaA06g07360D | Glyoxalase | 0.2625 | 0.0884 | 0.3368 | |
| AT1G06570 | BnaHPPD1 | BnaC05g04530D | HPPD | 0.0607 | 0.0553 | 0.9118 |
| BnaHPPD2 | BnaA09g49870D | HPPD | 0.048 | 0.0461 | 0.9598 | |
| BnaHPPD3 | BnaC08g44820D | HPPD | 0.0531 | 0.0507 | 0.9549 | |
| BnaHPPD4 | BnaA10g04310D | HPPD | 0.6695 | 1.767 | 2.6391 | |
| NINE-COPY LOCI | ||||||
| AT1G15380 | BnaGLYI13 | BnaC05g11680D | Glyoxalase | 0.1089 | 0.0543 | 0.4983 |
| BnaGLYI14 | BnaA08g23870D | Glyoxalase | 0.1361 | 0.0583 | 0.4285 | |
| BnaGLYI15 | BnaA06g10060D | Glyoxalase | 0.1152 | 0.0598 | 0.5195 | |
| BnaGLYI16 | BnaC08g16660D | Glyoxalase | 0.1445 | 0.0613 | 0.424 | |
| BnaGLYI17 | BnaA09g56790D | Glyoxalase | 0.1976 | 0.0887 | 0.449 | |
| BnaGLYI18 | BnaC08g38920D | Glyoxalase | 0.2202 | 0.0917 | 0.4162 | |
| BnaGLYI19 | BnaA02g19970D | Glyoxalase | 0.0747 | 0.0864 | 1.1556 | |
| BnaGLYI20 | BnaC02g46640D | Glyoxalase | 0.0764 | 0.0922 | 1.2066 | |
| BnaGLYI21 | BnaC02g23290D | Glyoxalase | 0.0819 | 0.0952 | 1.1624 | |