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. 2017 Jan 31;33(10):1473–1478. doi: 10.1093/bioinformatics/btx021

Table 3.

Detected proteins mapped against the UniRef90

Type Project BWA PALADIN
Lung Cystic Fibrosis Metagenome 60 296 40 251*
Gut HMP Core Microbiome 175 448 190 947
Soil Merlot Microbiome 7921 11 792

Number of proteins detected for three empirical read sets mapped against the UniRef90: Lung (BioProject:PRJNA71831), Gut (BioSample:SAMN00037421) and Soil (MG-RAST:4520320.3), when filtered for reads with 20 or greater mapping quality scores. Note, the lower performance of PALADIN for the lung set is a result of the proteins being underrepresented in the filtered version of the UniProt90. Mapping against the full UniRef90 yielded 66 592 proteins detected.