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. 2017 May 9;4(1):22. doi: 10.1186/s40643-017-0152-x

Table 1.

Information of databases used in this study

Abbreviation Full name Purpose Link
KEGG Kyoto encyclopedia of genes and genomes Obtain genome annotation, reaction information chemical compounds annotation http://www.genome.jp/dbget-bin/www_bfind?compound
CheBI Chemical entities of biological interest Obtain chemical compounds annotation https://www.ebi.ac.uk/chebi/
BiGG Biochemical genetic and genomic knowledgebase Obtain reaction information and chemical compounds annotation http://bigg.ucsd.edu/bigg/main.pl
Ensembl fungi Ensembl fungi Obtain genome annotations http://fungi.ensembl.org/index.html
UniProtKB The universal protein resource knowledgebase Obtain genome annotations http://www.uniprot.org/
IMG The integrated microbial genomes system Obtain genome annotations http://img.jgi.doe.gov/
ENZYME Enzyme nomenclature database Obtain relations between enzyme and reactions http://enzyme.expasy.org/