TABLE 1.

Sequence processing summary averages^a

Group	Avg no. of reads		Avg mapping %b	Avg transcriptome coverage %c
	Prefiltering	Postfiltering
Challenged	14,351,100	11,019,846	89.7	76.0
Nonchallenged	14,478,105	11,909,690	89.8	75.7
Fayoumi	13,487,623	11,122,267	89.8	76.0
Leghorn	14,313,716	11,770,191	89.8	75.7
Overall	13,900,670	11,446,229	89.8	75.8

^aAverages were taken across four treatment groups.

^bThe mapping percentage was calculated as the number of reads mapped to the reference genome divided by the number of reads postfiltering.

^cTranscriptome coverage percentage was calculated as the number of transcripts with at least one mapped read divided by the total number of transcripts.