TABLE 2.

Genes whose expression levels were significantly affected by challenge and line

Ensembl transcript identifier	Gene namea	LFCb	FDRc	dpid	Descriptiona	Source	Accession no.
ENSGALT00000015621	DMBT1	3.09	0.00574	2	Uncharacterized protein	UniProtKB/TrEMBL	E1C1A5
ENSGALT00000034031		−5.82	0.00004	6	Uncharacterized protein	UniProtKB/TrEMBL	F1NSC8
ENSGALT00000009555		−4.73	0.00034	6	Uncharacterized protein	UniProtKB/TrEMBL	F1NC22
ENSGALT00000018840	IGJ	−4.63	0.00034	6	Immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptide precursors	RefSeq peptide	NP_989594
ENSGALT00000034032		−5.11	0.00046	6	Uncharacterized protein	UniProtKB/TrEMBL	F1NSC7
ENSGALT00000009519		−4.69	0.00052	6	Ig lambda chain V-1 region	UniProtKB/Swiss-Prot	P04210
ENSGALT00000009564		−4.81	0.00052	6	Uncharacterized protein	UniProtKB/TrEMBL	F1NBX7
ENSGALT00000002609	GABRA1	4.48	0.00064	6	Gamma-aminobutyric acid receptor subunit alpha-1	UniProtKB/Swiss-Prot	P19150
ENSGALT00000008309	STX3	−2.86	0.00148	6	Syntaxin 3	HGNCe symbol	11438
ENSGALT00000011371		−3.08	0.00351	6	Uncharacterized protein	UniProtKB/TrEMBL	F1NGI5
ENSGALT00000003541		−4.45	0.00416	6	Uncharacterized protein	UniProtKB/TrEMBL	H9KZ23
ENSGALT00000004568	ENPP3	−3.98	0.00705	6	Ectonucleotide pyrophosphatase/phosphodiesterase 3	HGNC symbol	3358
ENSGALT00000043739		4.41	0.01388	6	Uncharacterized protein	UniProtKB/TrEMBL	R4GFG6
ENSGALT00000025174	DOK7	2.11	0.01447	6	Docking protein 7	HGNC symbol	26594
ENSGALT00000002058	TEKT3	3.89	0.01473	6	Tektin 3	HGNC symbol	14293
ENSGALT00000022671		−1.45	0.01473	6	Uncharacterized protein	UniProtKB/TrEMBL	E1BUA6
ENSGALT00000034018		−4.12	0.01984	6	Uncharacterized protein	UniProtKB/TrEMBL	F1NSD3
ENSGALT00000040746	TNFRSF13B	−4.29	0.03047	6	Tumor necrosis factor receptor superfamily member 13B	RefSeq peptide	NP_001091006
ENSGALT00000038130	HEPACAM2	1.97	0.03127	6	HEPACAM family member 2	HGNC symbol	27364
ENSGALT00000037100	CTNND2	1.76	0.03708	6	Catenin delta 2	HGNC symbol	2516
ENSGALT00000043820	MZB1	−3.68	0.03827	6	Marginal zone B and B1 cell-specific protein	HGNC symbol	30125
ENSGALT00000006673		−1.88	0.04387	6	Uncharacterized protein	UniProtKB/TrEMBL	F1P1M1
ENSGALT00000036627		1.71	0.04387	6	cHz-cadherin precursor	RefSeq peptide	NP_001001754
ENSGALT00000012349	MEGF11	1.51	0.04440	6	Multiple EGF-like-domains 11	HGNC symbol	29635
ENSGALT00000027128	SULT1C	−1.39	0.04901	6	Sulfotransferase 1C1	RefSeq peptide	NP_989932
ENSGALT00000031381		1.66	0.04901	6	Uncharacterized protein	UniProtKB/TrEMBL	E1C402
ENSGALT00000009564		−4.86	0.00638	10	Uncharacterized protein	UniProtKB/TrEMBL	F1NBX7
ENSGALT00000043908		3.33	0.00638	10	Uncharacterized protein	UniProtKB/TrEMBL	R4GM39
ENSGALT00000030326	NYX	4.54	0.03834	10	Nyctalopin	HGNC symbol	HGNC:8082
ENSGALT00000038746	HDC	2.67	0.03834	10	Histidine decarboxylase	HGNC symbol	4855

^aEnsembl BioMart software was used to obtain the gene name and description from the transcript identifier.

^bLFC, log₂ fold change.

^cFDR, false discovery rate.

^ddpi, days postinfection.

^eHGNC, Human Gene Nomenclature Committee.