Table 1. Contribution from each state toward the AMEN epidemiological and diversity study showing HIV subtype characteristics and baseline sequence information.
State | Method | Year | Sequence (n) | SUBTYPE ID (assigned from Stanford DB) |
Hospital/ Service |
|||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
B Subtype | CRF01_AE Subtype | C Subtype | CRF02_AG Subtype | D Subtype | Recombinant Forms | Other Subtypes | ||||||
WA | Stanford dB | 2005–2012 | 724 | 427 | 139 | 109 | 17 | 5 | 23 | 4 | RPH-DCI | |
SA | Stanford dB | 2005–2012 | 351 | 240 | 38 | 35 | 20 | 1 | 9 | 8 | SA Health | |
VIC | Los Alamos dB |
2005–2012 | 1668 | 1261 | 174 | 153 | 10 | 4 | 49 | 17 | VIDRL | |
W-Sydney | Stanford dB | 2005–2011 | 551 | 407 | 43 | 54 | 21 | 3 | 13 | 10 | Westmead | |
QLD | Stanford dB | 2007–2012 | 1579 | 1296 | 90 | 124 | 20 | 8 | 34 | 7 | Pathology QLD HIV Reference Lab | |
Total | 4873 | 3631 | 484 | 475 | 88 | 21 | 128 | 46 |