Table 2.

Gene annotation of NBS-LRR gene which located in the genomic intervals of QTL1 and QTL11 of JHN using Nipponbare reference sequence

QTL	Chromosome	Chromosomal location of genomic interval (bp)	Annotation of NBS-LRR genes		Allelic genes	References
			NBS-LRR gene model	Chromosomal location (bp)
QTL1	1	33,054,867-33,678,804	LOC_Os01g57270	33,091,703 – 33,096,363	NA
			LOC_Os01g57280	33,099,464 – 33,103,906	Pi64	Ma et al. 2015
			LOC_Os01g57310	33,116,117 – 33,124,371	Pi37	Lin et al. 2007
			LOC_Os01g57340	33,141,127 – 33,145,609	Pish/Pi35	Takahashi et al. 2010 and Fukuoka et al. 2014
			LOC_Os01g57870	33,463,913 – 33,460,254	NA
QTL11	11	27,673,251-28,281,693	LOC_Os11g45750.1	27,695,070 – 27,683,753	NA
			XM_015761791.1	27,692,238 – 27,694,418	NA
			LOC_Os11g45790	27,707,310 – 27,703,761	NA
			LOC_Os11g45930	27,793,777 – 27,797,821	NA
			LOC_Os11g45970	27,812,251 – 27,818,431	NA
			NP_001068480.1	27,821,921 – 27,824,507	NA
			XM_015760098.1	27,885,376 – 27,886,175	NA
			LOC_Os11g46200.1	27,978,368 – 27,983,597	Pik-1 alleles	Ashikawa et al. 2012
			LOC_Os11g46210	27,984,697 – 27,989,134	Pik-2 alleles	Ashikawa et al. 2012