TABLE 1.
Accession numbers and genetic analyses of V. parahaemolyticus strains reported in this study
| Strain | Accession no. | Genome size (bp) | N50 (bp) | No. of contigs | pyrCa | gyrBa | recAa | dnaEa | tnaAa | pntAa | dtdSa | Pirb |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MVP1 | MQMQ01000000 | 5,230,330 | 60,033 | 172 | 303 | 143c (591/592) | 218 | 308c (556/557) | 26 | 30 | 355c (457/458) | + |
| MVP2 | MSBY01000000 | 5,275,177 | 129,821 | 89 | 303 | 143c (591/592) | 218 | 308c (556/557) | 26 | 30 | 355c (457/458) | + |
| MVP4 | MSBZ01000000 | 5,270,749 | 94,277 | 122 | 27 | 141 | 31c (728/729) | 110c (556/557) | 26 | 18 | 232 | − |
| MVP6 | MSCA01000000 | 5,195,990 | 47,800 | 190 | 303 | 143c (591/592) | 218 | 308c (556/557) | 26 | 30 | 355c (457/458) | + |
| MVP9 | MSCB01000000 | 4,967,664 | 87,871 | 115 | 54c (492/493) | 144 | 116 | 28 | 61 | 26 | 252 | − |
a
Numerical values indicate the MLST allele for the respective genes.
b
+, presence of both pirA and pirB genes; −, absence of both pirA and pirB genes.
c
Closest allele hit, with values in parentheses indicating the number of positions over the length of the gene fragment where all of the bases at that position are identical.