Table 1. Summary of the genomic metrics for the PA42 and TCO genomes.
| TCO | PA42 3.0 | |
|---|---|---|
| Genome size, including gaps (bp) | 197,261,574 | 156,418,198 |
| Number of scaffolds | 5191 | 1822 |
| Length of largest scaffold (bp) | 4,163,030 | 1,661,524 |
| Mean scaffold length (bp) | 38,001 | 85,849 |
| Number of N50 scaffold | 75 | 96 |
| Total length of gaps (bp) | 38,612,943 | 13,454,790 |
| Number of annotated genes | 30,097 | 18,440 |
| Mean length of a coding gene (including introns) (bp) | 2289 | 2998 |
| Mean number of exons/gene | 6.6 | 6.9 |
| Mean exon size (bp) | 212 | 237 |
| Mean intron size (bp) | 169 | 223 |
| Mean UTR size (bp) | 371 | 214 |
| Fraction of long introns | 10% | 14% |
TCO data are compiled from Colbourne et al. (2011). Long introns are defined as having a length exceeding the average exon size. UTR, untranslated region.