Table 2.
Primers used in this study
| Oligonucleotides | Sequence |
|---|---|
| Glms-F | CCCCCCCGAGCTCAGGTTACCCGGATCTATGGAAATCGGCGTAGCGTCAACCAAG |
| Glms-R | CCCTCGAGTACGCGTCACTAGTGGGGCCCTTCGCGCTTTTATTCTACGGTAACCG |
| Glms-yz-F | AGAGATTGGCTACTTGGGATCGTTG |
| KmCS-F (SalI) | ACGCGTCGACATTGTGAGCGGATAACAATTTGTGG |
| KmCS-R (SalI) | ACGCGTCGACTAGATCCGGGTAACCTGAGCT |
| evpP-F | TCATCGCACATACAGAATAAACGCC |
| evpP-R | CCGTAACATTTCTTACAACACTGCG |
| virB9-P1 | CCCCCCCGAGCTCAGGTTACCCGGATCTATGGCCACTGGTTTGTTGTAGGGCCAT |
| virB9-P2 | CAAATTGCCATGGGCTGATGGCTGAGAACAGAGACGATCTGGA |
| virB9-P3 | TGTTCTCAGCCATCAGCCCATGGCAATTTGTTGGACCGTT |
| virB9-P4 | GAGTACGCGTCACTAGTGGGGCCCTTCTAGCGCGAGGGCTATCAGTGGGAAACCC |
| virB9-out-F | GCGCCCAGGCCGTCCGCTCGTTCAG |
| virB9-out-R | CCGCGTCGATAACAACACTGGCGTG |
| virB9-in-F | TTGACTCCCTCTAATTACTCGCTCA |
| virB9-in-R | GTCGGAAATCACATTTTCATCAAGC |
| p007-P1 | CCCCCCCGAGCTCAGGTTACCCGGATCTATTGGCGCGGGTCGGTATATGCGGCAT |
| p007-P2 | AGGAGAGTTCGAGTGGCTTGGTCATCCGAGGAATGGAGGC |
| p007-P3 | CTCGGATGACCAAGCCACTCGAACTCTCCTTGATCAGTGT |
| p007-P4 | GAGTACGCGTCACTAGTGGGGCCCTTCTAGTTTTTGAAAGCTGGCTAGGCATGGT |
| p007-out-F | CTGCGCTCCCCTGCCCTTTTCACCT |
| p007-out-R | TGCGCTTTCTCTCGTTGTGGCGTTC |
| topA-P1 | CCCCCCCGAGCTCAGGTTACCCGGATCTATGGTCCAGGACCCAATCCACCCCTTC |
| topA-P2 | TAGGGAGGACCAATGTGAGCTTGGCGGCAATCAAAGTTGT |
| topA-P3 | TTGCCGCCAAGCTCACATTGGTCCTCCCTACCGTCAACCA |
| topA-P4 | GAGTACGCGTCACTAGTGGGGCCCTTCTAGACCTCCAGTCGGTCGAGTTGAGCAA |
| topA-out-F | GGCCGCGATAATCAGGTCAACGATG |
| topA-out-R | CACCTGTGCGGCCCTGTCCGGGGCT |
| topA-in-F | ACCAAAAATCGTAACCCTTCTTGCC |
| topA-in-R | AGGGTGGGACGTGCAGGCCAGTGTC |
| pDMK-PF | AAAGCTCTCATCAACCGTGGC |
| pDMK-PR | TGCTCCAGTGGCTTCTGTTTC |
| topA-C-F | GATCCTCTAGATTTAAGAAGGAGATATACAATGAATCTAGTTATTGTTGA |
| topA-C-R | GATCCCCCGGGCTGCAGGAATTCGATATCATCAAATCTTTGGCTTGCCAC |
| p007-C-F | GATCCTCTAGATTTAAGAAGGAGATATACAGTGAACCTGAAAACACTAAG |
| p007-C-R | GATCCCCCGGGCTGCAGGAATTCGATATCATCAGTGATGGCCTCCATTCC |
| virB9-C-F | GATCCTCTAGATTTAAGAAGGAGATATACAATGATACGAGCAAAATCACT |
| virB9-C-R | GATCCCCCGGGCTGCAGGAATTCGATATCATCATTGACTCCCTCTAATTA |
| virB9-qRT-F | TCATGTTCGTGGTCGCATCA |
| virB9-qRT-R | CCATTTTGGCTTCTCCACGC |
| virB4-qRT-F | TGGGGGCCGTTTTGAGATAC |
| virB4-qRT-R | GCGGCAGCTTCAATAACCAG |
| avtA-qRT-F | TTACTCCGCAATCACCCGTC |
| avtA-qRT-R | CAGCTCACCGCATAGGGAG |
| P021-qRT-F | AAAGCCCCAAACCGTAAAGC |
| P021-qRT-R | ATGCGGGAATGGGTCAGTTT |
| gyrB-qRT-F | CCGATGATGGTACGGGTCTG |
| gyrB-qRT-R | GCTTTTCAGACAGGGCGTTC |
| p003-qRT-F | GCCGAAGCGTTCCCAAAAAT |
| p003-qRT-R | CCTGTGGAATCGCATCGAGA |
| pD43B-p003-F | GAGCTCAGGTTACCCGCATGCAAGATCTATATGATGGCTGAGAACAGAGACGATC |
| pD43B-p003-R | ATACGTATTTGACATTCAATCGGCTTTGAGGTCATATACC |
| pD43B-gyrB-F | CTCAAAGCCGATTGAATGTCAAATACGTATGACTCCTCAA |
| pD43B-gyrB-R | CCCTCGAGTACGCGTCACTAGTGGGGCCCTTTAAAAGTCCAGATTGGACGCTTTA |