Table 1.
De novo transcriptome assembly statistics for P. palmivora
| Metric | Value |
|---|---|
| General assembly statistics | |
| Total Trinity 'genes' | 48,088 |
| Total Trinity transcripts | 80,258 |
| Percent GC | 48.27 |
| Smallest contig | 201 |
| Largest contig | 217,111 |
| Statistics based on all transcript contigs | |
| Contig N10 | 6335 |
| Contig N20 | 4510 |
| Contig N30 | 3443 |
| Contig N40 | 2621 |
| Contig N50 | 1978 |
| Median contig length | 282 |
| Average contig length | 788 |
| Total assembled bases | 63,247,196 |
| Statistics based on the longest isoform per gene | |
| Contig N10 | 6738 |
| Contig N20 | 4702 |
| Contig N30 | 3604 |
| Contig N40 | 2724 |
| Contig N50 | 2003 |
| Median contig length | 273 |
| Average contig length | 765 |
| Total assembled bases | 36,825,977 |
| Eukaryotic BUSCO genes | |
| Complete single-copy BUSCOs | 256 |
| Complete duplicated BUSCOs | 40 |
| Fragmented BUSCOs | 30 |
| Missing BUSCOs | 103 |
| Total BUSCO groups searched | 429 |
| Total BUSCO genes recovered | 326 (76%) |
| Phytophthora BUSCOs | 374 |
| Updated % recoverable BUSCOs | 87 |
BUSCO benchmarking universal single-copy orthologues