Table 1.

Comparison of the success rates for protein dimers assembled from the crystal structures and computer-generated models of monomers

Protocol	Crystal structures		Protein models
	iRMSD ≤2.5 Å	PCS ≥0.65	iRMSD ≤8.5 Å	PCS ≥0.30
ZDOCK	51.5%	52.1%	28.1%	23.2%
ZDOCK + eRankPPI	58.3%	59.6%	43.7%	39.3%
ZDOCK + eRankPPI + FiberDock	72.8%	73.2%	52.4%	48.7%

The acceptance criteria for correct predictions are an iRMSD of ≤2.5 Å and PCS ≥0.65 for crystal structures, and an iRMSD of ≤8.5 Å and PCS ≥0.30 for protein models. The best of top 10 dimer models is considered