Table 3.

Six loci significantly (P < 0.005) associated with seedling resistance against at least two races of PSTv-14, PSTv-37, PSTv-40, PSTv-51, PSTv-106, and PSTv-110 of Puccinia striiformis f. sp. tritici.

Yr gene			Tag-SNPa					-log(P)h
Name	Chromb	CI (cM)c	Index	Alleled	RAFe	R2f	Associated SNPg	PSTv-14	PSTv-37	PSTv-40	PSTv-51	PSTv-106	PSTv-110
YrEDWL-1AS	1AS	7.65–12.15	IWB73129	C/T	0.22	0.045–0.046	IWB7333	2.76	3.06	–	–	–	–
YrEDWL-1BS.1	1BS	3.55–8.05	IWA7398	C/T	0.15	0.039–0.048	NA	2.44	–	–	2.73	–	–
YrEDWL-1BS.2	1BS	34.85–39.35	IWB36298	A/C	0.18	0.086–0.117	IWB31756, IWB10480, IWB38291, IWB74352, IWB74353, IWB669	6.01	6.64	–	–	5.30	–
YrEDWL-3AS	3AS	35.65–40.15	IWB7165	C/T	0.34	0.038–0.051	NA	2.38	–	–	2.88	–	–
YrEDWL-4BL	4BL	108.15–112.65	IWB35335	A/G	0.51	0.040–0.051	NA	2.47	–	–	2.88	–	–
YrEDWL-5BL	5BL	202.45–206.95	IWB20223	A/G	0.39	0.034–0.043	NA	2.42	2.43	–	2.51	–	–

^aTag-SNP is the SNP with the strongest association in the defined QTL region. ^bChromosome of the identified locus is based on the tetraploid wheat consensus map generated by Maccaferri et al. (2015a). ^cConfidence interval of the identified locus derived from a genetic distance of ±2.25 cM from the tag-SNPs; confidence interval positions based on the tetraploid wheat consensus map generated by Maccaferri et al. (2015a). ^dResistance allele of the tag-SNP is highlighted in bold and underlined. ^eResistance allele frequency of the tag-SNP. ^fPhenotypic variances explained by the identified locus calculated in MLM with Q3 and K. ^gSignificant (P < 0.005) SNPs associated with the corresponding Pst races and fall into a genetic distance of 2.25 cM from the tag-SNPs. NA means not applicable. ^h-log (Marker-trait association P values); “-” means not significant; -log (P) > 2.3 and > 3 correspond to P-values < 0.005 and < 0.001.