Table 1.
Identification of domain for cellulose, xylan, and chitin deconstruction in sequenced fungal genomes.
| Domain (PFamID) #dom./#prot. % of 1-Domain | Multi-activity enzymes (Domain architecture) | #prot. | Example (Strain – Gene id) |
|---|---|---|---|
| GH5 (PF00150) 2263/2255 85% | CBM1–2(GH5) | 2 | Sistotremastrum niveocremeum HHB9708 ss-1_1.0 (Sisni1|484442) |
| CBM1-GH5-GH6 | 2 | Sistotremastrum suecicum (Sissu1|1057361) | |
| 2(GH5) | 4 | Rhizophagus irregularis DAOM 181602 (Gloin1|64734) | |
| 2(GH5)−2(CBM10) | 2 | Orpinomyces sp. (Orpsp1_1|1180573) | |
| GH6 (PF01341) 249/249 54% | GH3-CBM10-GH6–2(CBM10) | 1 | Orpinomyces sp. (Orpsp1_1|1176522) |
| CBM1-GH5-GH6 | 2 | Sistotremastrum niveocremeum HHB9708 ss-1 1.0 (Sisni1|485627) | |
| GH7 (PF00840) 439/439 69% | GH13-CBM20-GH7 | 1 | Phaeomoniella chlamydospora UCRPC4 (Phach1|4371) |
| GH8 (PF01270) 12/12 100% | |||
| GH9 (PF00759) 82/82 87% | |||
| GH10 (PF00331) 531/527 67% | CBM1–2(GH10) | 2 | Sebacina vermifera MAFF 305830 (Sebve1|110734) |
| CBM1–3(GH10) | 1 | Piriformospora indica DSM 11827 from MPI (Pirin1|75864) | |
| GH11-GH10–2(CBM10) | 1 | Orpinomyces sp. (Orpsp1_1|1191833) | |
| GH11 (PF00457) 382/373 82% | GH11–3(CBM10)-GH11 | 2 | Orpinomyces sp. (Orpsp1_1|1184756) |
| GH11–2(CBM10)-GH11 | 1 | Orpinomyces sp. (Orpsp1_1|1175252) | |
| GH11-CBM10-GH11-CBM10-GH11 | 1 | Orpinomyces sp. (Orpsp1_1|1175428) | |
| GH11-GH10–2(CBM10) | 1 | Orpinomyces sp. (Orpsp1_1|1191833) | |
| 2(GH11) | 4 | Allomyces macrogynus ATCC 38327 (Allma1|15884) | |
| GH12 (PF01670) 376/376 96% | |||
| GH18 (PF00704) 2290/2284 75% | 2(GH18) | 6 | Puccinia striiformis f. sp. tritici PST-130 (Pucst1|501894) |
| GH18-GH25 | 5 | Chaetomium globosum v1.0 (Chagl_1|16288) | |
| GH18-GH81 | 1 | Macrophomina phaseolina MS6 (Macph1|905) | |
| GH25-CBM18-GH18 | 9 | Chaetomium globosum v1.0 (Chagl_1|12853) | |
| GH25-GH18 | 22 | Trichophyton verrucosum HKI 0517 (Triver1|3242) | |
| 2(GH25)-CBM18-GH18 | 2 | Volvariella volvacea V23 (Volvo1|121331) | |
| 2(GH25)-GH18 | 1 | Eutypa lata UCREL1 (Eutla1|3713) | |
| 8(GH25)-GH18 | 1 | Allomyces macrogynus ATCC 38327 (Allma1|9612) | |
| GH30 (PF02055) 147/147 75% | |||
| GH44 (PF12891) 26/26 85% | |||
| GH45 (PF02015) 148/148 71% | |||
| GH48 (PF02011) 11/11 54% | |||
| GH85 (PF03644) 96/96 97% | |||
| AA9 (PF03067).1803/1795 79% | AA9-AA9 | 7 | Melampsora lini CH5 (Melli1|198847) |
| AA10 (PF03443) 171 /171 79% | |||