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. 2017 Apr 27;7(1):70. doi: 10.1007/s13205-017-0667-z

Table 2.

Numerical data as obtained from PCR amplification by RAPD primers among Costus pictus accessions

Sr. no. Primer name Primer sequence 5′–3′ GC content (%) Annealing temperature Total number of bands Total number of loci Monomorphic loci Polymorphic loci Polymorphism % PIC Molecular weight (bp)
1 OPK-07 AGCGAGCAAG 60 36 133 10 8 2 20.00 0.89 220–1500
2 OPK-16 GAGCGTCGAA 60 36 283 24 15 9 37.50 0.95 160–2670
3 OPK-18 CCTAGTCGAG 60 36 159 14 8 6 42.86 0.92 190–2580
4 OPK-20 GTGTCGCGAG 70 38 154 16 8 8 50.00 0.91 280–2200
5 OPM-01 GTTGGTGGCT 60 36 184 17 10 7 41.18 0.93 230–2640
6 OPM-02 ACAACGCCTC 60 36 128 12 7 5 41.67 0.90 220–1720
7 OPM-03 GGGGGATGAG 70 38 121 13 7 6 46.15 0.89 260–2930
8 OPM-04 GGCGGTTGTC 70 38 144 11 8 3 27.27 0.91 160–1800
9 OPM-05 GGGAACGTG 67 37 156 14 8 6 42.86 0.90 120–2200
10 OPM-06 CTGGGCAACT 60 36 139 12 8 4 33.33 0.90 130–3125
11 OPM-07 CCGTGACTCA 60 36 138 12 7 5 41.67 0.90 245–2065
12 OPM-08 TCTGTTCCCC 60 36 151 13 7 6 46.15 0.91 240–2100
13 OPM-09 GTCTTGCGGA 60 36 162 13 10 3 23.08 0.91 160–2900
14 OPM-14 TCTGGCGCAC 70 38 115 9 7 2 22.22 0.88 110–1350
15 OPN-02 ACCAGGGGCA 70 38 109 9 6 3 33.33 0.87 110–2200
16 OPN-04 GACCGACCCA 70 38 245 19 14 5 26.32 0.94 141–1600
17 OPN-06 GAGACGCACA 60 36 128 12 7 5 41.67 0.90 190–3110
18 OPN-07 CAGCCCAGAG 70 38 198 19 11 8 42.11 0.93 140–1050
19 OPN-08 ACCTCAGCTC 60 36 92 7 5 2 28.57 0.85 390–1410
20 OPN-09 TGCCGGCTTG 70 38 154 15 9 6 40.00 0.91 240–2480
21 OPN-10 ACAACTGGGG 60 36 239 20 14 6 30.00 0.94 140–1860
22 OPN-13 AGCGTCACTC 60 36 102 9 6 3 33.33 0.87 330–2160
23 OPN-15 CAGCGACTGT 60 36 166 14 10 4 28.57 0.92 200–2420
24 OPN-16 AAGCGACCTG 60 36 149 14 8 6 42.86 0.91 250–3190
25 OPN-18 GGTGAGGTCA 60 36 194 15 11 4 26.67 0.93 170–3000
Total 3943 343 219 124
Average/primer 157.72 13.72 8.76 4.96 35.57 0.91 110–3190a

aRange