Table 2.
Sr. no. | Primer name | Primer sequence 5′–3′ | GC content (%) | Annealing temperature | Total number of bands | Total number of loci | Monomorphic loci | Polymorphic loci | Polymorphism % | PIC | Molecular weight (bp) |
---|---|---|---|---|---|---|---|---|---|---|---|
1 | OPK-07 | AGCGAGCAAG | 60 | 36 | 133 | 10 | 8 | 2 | 20.00 | 0.89 | 220–1500 |
2 | OPK-16 | GAGCGTCGAA | 60 | 36 | 283 | 24 | 15 | 9 | 37.50 | 0.95 | 160–2670 |
3 | OPK-18 | CCTAGTCGAG | 60 | 36 | 159 | 14 | 8 | 6 | 42.86 | 0.92 | 190–2580 |
4 | OPK-20 | GTGTCGCGAG | 70 | 38 | 154 | 16 | 8 | 8 | 50.00 | 0.91 | 280–2200 |
5 | OPM-01 | GTTGGTGGCT | 60 | 36 | 184 | 17 | 10 | 7 | 41.18 | 0.93 | 230–2640 |
6 | OPM-02 | ACAACGCCTC | 60 | 36 | 128 | 12 | 7 | 5 | 41.67 | 0.90 | 220–1720 |
7 | OPM-03 | GGGGGATGAG | 70 | 38 | 121 | 13 | 7 | 6 | 46.15 | 0.89 | 260–2930 |
8 | OPM-04 | GGCGGTTGTC | 70 | 38 | 144 | 11 | 8 | 3 | 27.27 | 0.91 | 160–1800 |
9 | OPM-05 | GGGAACGTG | 67 | 37 | 156 | 14 | 8 | 6 | 42.86 | 0.90 | 120–2200 |
10 | OPM-06 | CTGGGCAACT | 60 | 36 | 139 | 12 | 8 | 4 | 33.33 | 0.90 | 130–3125 |
11 | OPM-07 | CCGTGACTCA | 60 | 36 | 138 | 12 | 7 | 5 | 41.67 | 0.90 | 245–2065 |
12 | OPM-08 | TCTGTTCCCC | 60 | 36 | 151 | 13 | 7 | 6 | 46.15 | 0.91 | 240–2100 |
13 | OPM-09 | GTCTTGCGGA | 60 | 36 | 162 | 13 | 10 | 3 | 23.08 | 0.91 | 160–2900 |
14 | OPM-14 | TCTGGCGCAC | 70 | 38 | 115 | 9 | 7 | 2 | 22.22 | 0.88 | 110–1350 |
15 | OPN-02 | ACCAGGGGCA | 70 | 38 | 109 | 9 | 6 | 3 | 33.33 | 0.87 | 110–2200 |
16 | OPN-04 | GACCGACCCA | 70 | 38 | 245 | 19 | 14 | 5 | 26.32 | 0.94 | 141–1600 |
17 | OPN-06 | GAGACGCACA | 60 | 36 | 128 | 12 | 7 | 5 | 41.67 | 0.90 | 190–3110 |
18 | OPN-07 | CAGCCCAGAG | 70 | 38 | 198 | 19 | 11 | 8 | 42.11 | 0.93 | 140–1050 |
19 | OPN-08 | ACCTCAGCTC | 60 | 36 | 92 | 7 | 5 | 2 | 28.57 | 0.85 | 390–1410 |
20 | OPN-09 | TGCCGGCTTG | 70 | 38 | 154 | 15 | 9 | 6 | 40.00 | 0.91 | 240–2480 |
21 | OPN-10 | ACAACTGGGG | 60 | 36 | 239 | 20 | 14 | 6 | 30.00 | 0.94 | 140–1860 |
22 | OPN-13 | AGCGTCACTC | 60 | 36 | 102 | 9 | 6 | 3 | 33.33 | 0.87 | 330–2160 |
23 | OPN-15 | CAGCGACTGT | 60 | 36 | 166 | 14 | 10 | 4 | 28.57 | 0.92 | 200–2420 |
24 | OPN-16 | AAGCGACCTG | 60 | 36 | 149 | 14 | 8 | 6 | 42.86 | 0.91 | 250–3190 |
25 | OPN-18 | GGTGAGGTCA | 60 | 36 | 194 | 15 | 11 | 4 | 26.67 | 0.93 | 170–3000 |
Total | 3943 | 343 | 219 | 124 | – | – | – | ||||
Average/primer | 157.72 | 13.72 | 8.76 | 4.96 | 35.57 | 0.91 | 110–3190a |
aRange