Table 5.
Sr. no | Primer name | Primer sequence 5′–3′ | GC content % | Annealing temperature | Total number of bands | Total number of loci | Monomorphic loci | Polymorphic loci | Polymorphism % | PIC value | Molecular weight (bp) |
---|---|---|---|---|---|---|---|---|---|---|---|
1 | UBC 808 | AGAGAGAGAGAGAGAGC | 53 | 60 | 99 | 8 | 3 | 5 | 62.50 | 0.87 | 370–2025 |
2 | UBC 809 | AGAGAGAGAGAGAGAGG | 53 | 60 | 104 | 11 | 6 | 5 | 45.45 | 0.88 | 380–2190 |
3 | UBC 811 | GAGAGAGAGAGAGAGAC | 53 | 63 | 60 | 6 | 3 | 3 | 50.00 | 0.79 | 450–2515 |
4 | UBC 812 | GAGAGAGAGAGAGAGAA | 47 | 51 | 63 | 5 | 4 | 1 | 20.00 | 0.77 | 250–1700 |
5 | UBC 818 | CACACACACACACACAG | 53 | 53 | 253 | 13 | 6 | 7 | 53.85 | 0.91 | 260–2500 |
6 | UBC 826 | ACACACACACACACACC | 53 | 53 | 102 | 11 | 8 | 3 | 27.27 | 0.90 | 200–2220 |
7 | UBC 834 | AGAGAGAGAGAGAGAGYT | 44 | 52.5 | 113 | 10 | 6 | 4 | 40.00 | 0.88 | 320–1880 |
8 | UBC 835 | AGAGAGAGAGAGAGAGYC | 50 | 52.5 | 91 | 7 | 5 | 2 | 28.57 | 0.85 | 400–1790 |
9 | UBC 841 | GAGAGAGAGAGAGAGAY | 47 | 52.5 | 88 | 7 | 4 | 3 | 42.86 | 0.84 | 640–2830 |
10 | UBC 842 | GAGAGAGAGAGAGAGAYG | 50 | 53 | 122 | 9 | 4 | 5 | 55.56 | 0.89 | 355–2400 |
11 | UBC 847 | CACACACACACACACARC | 50 | 53 | 86 | 8 | 4 | 4 | 50.00 | 0.85 | 610–3070 |
12 | UBC 848 | CACACACACACACACARG | 50 | 52.5 | 101 | 8 | 6 | 2 | 25.00 | 0.86 | 335–2190 |
13 | UBC 852 | GTGTGTGTGTGTGTGTYC | 50 | 52 | 116 | 10 | 4 | 6 | 60.00 | 0.89 | 305–2725 |
14 | UBC 866 | CTCCTCCTCCTCCTCCTC | 67 | 57.5 | 94 | 9 | 4 | 5 | 55.56 | 0.87 | 305–2830 |
15 | UBC 880 | GGAGAGGAGAGGAGA | 60 | 55.5 | 115 | 9 | 6 | 3 | 33.33 | 0.88 | 400–2580 |
16 | UBC 883 | TATATATATATATABVB | 0 | 36.8 | 105 | 8 | 5 | 3 | 37.50 | 0.87 | 400–2180 |
17 | UBC 888 | CACACACACACACABDB | 41 | 50.5 | 105 | 8 | 6 | 2 | 25.00 | 0.87 | 390–2000 |
18 | UBC 889 | ACACACACACACACACDBD | 42 | 51.5 | 108 | 11 | 4 | 7 | 63.64 | 0.89 | 385–2560 |
19 | UBC 890 | CTCTCTCTCTCTCTVHV | 41 | 51 | 115 | 9 | 6 | 3 | 33.33 | 0.88 | 305–2770 |
20 | UBC 891 | TGTGTGTGTGTGTGHVH | 41 | 51 | 121 | 10 | 6 | 4 | 40.00 | 0.89 | 310–2680 |
Total | 2161 | 177 | 100 | 77 | – | – | – | ||||
Average/primer | 108.05 | 8.85 | 5 | 3.85 | 42.47 | 0.87 | 200–3070a |
aRange