Table 1.

Statistics of Illumina sequencing data.

Samples	Raw reads	Clean reads	Clean bases	Q20 (%)	Q30 (%)	Notes
HD_72 h_1	55,333,426	52,820,790	7.92 G	96.48	91.8	replicate 1
HD_72 h_2	54,001,208	51,490,186	7.72 G	96.48	91.77	replicate 2
HD_72 h_3	53,280,954	51,467,222	7.72 G	96.24	91.34	replicate 3
HD_12 h_1	62,883,914	60,129,216	9.02 G	96.25	91.56	replicate 1
HD_12 h_2	58,867,280	56,178,894	8.43 G	96.41	91.81	replicate 2
HD_12 h_3	51,914,688	49,516,308	7.43 G	96.45	91.92	replicate 3
HD_ck_1	58,054,930	55,815,774	8.37 G	96.41	91.71	replicate 1
HD_ck_2	58,003,858	55,727,534	8.36 G	96.25	91.41	replicate 2
HD_ck_3	43,483,010	41,760,824	6.26 G	96.24	91.44	replicate 3
RBST_72 h_1	51,844,458	48,777,122	7.32 G	95.77	90.46	replicate 1
RBST_72 h_2	59,056,054	55,180,180	8.28 G	95.85	90.58	replicate 2
RBST_72 h_3	54,507,452	51,240,810	7.69 G	95.51	89.99	replicate 3
RBST_12 h_1	50,379,538	47,397,668	7.11 G	95.07	89.23	replicate 1
RBST_12 h_2	54,390,186	51,261,418	7.69 G	95.25	89.61	replicate 2
RBST_12 h_3	49,216,216	46,394,664	6.96 G	95.23	89.55	replicate 3
RBST_ck_1	64,574,816	61,315,592	9.2 G	96.56	91.92	replicate 1
RBST_ck_2	59,395,738	57,072,576	8.56 G	96.5	91.85	replicate 2
RBST_ck_3	54,730,068	52,547,094	7.88 G	96.42	91.7	replicate 3
Total	993,917,794	946,093,872	141.92 G	96.08	91.09