Table 5.
Single nucleotide polymorphisms in the mitochondrial genome of Vicia faba, comparing the Wizard cultivar with the reference sequence published by Negruk (2013)
The amino acid change is provided for non-synonymous mutations including the predicted effect on the protein calculated with Provean. SYN is a synonymous effect.
| Map identifier | Gene identity | SNP position | Reference base | Sequenced base | Effect | Provean score |
|---|---|---|---|---|---|---|
| rrn26.r01 | 26S rRNA | 167 803 | T | A | – | – |
| rrn18.r01 | 18S rRNA | 321 111 | T | G | – | – |
| rps14 | Ribosomal protein S14 | 36 460 | T | G | SYN | – |
| rps14 | Ribosomal protein S14 | 36 461 | C | G | G→A | –0.404 |
| rps14 | Ribosomal protein S14 | 36 462 | C | A | G→STOP | – |
| rps14 | Ribosomal protein S14 | 36 463 | A | T | SYN | – |
| rps14 | Ribosomal protein S14 | 36 490 | G | T | F→L | –1.059 |
| rps14 | Ribosomal protein S14 | 36 616 | A | G | SYN | – |
| nad6 | NADH dehydrogenase subunit 6 | 101 407 | A | T | SYN | – |
| nad6 | NADH dehydrogenase subunit 6 | 101 508 | G | T | L→I | –0.026 |
| nad4.CDS.3 | NADH dehydrogenase subunit 4 | 361 807 | T | G | F→L | 4.0 |
| matR | Maturase R | 90 908 | G | T | L→F | 1.622 |
| matR | Maturase R | 92 082 | A | C | K→Q | –0.223 |
| ORF106 | Hypothetical protein | 25 588 | C | A | H→N | –7.0 |
| ORF295 | Putative succinate dehydrogenase | 25 760 | C | A | H→N | 0.6 |
| ORF295 | Putative succinate dehydrogenase | 25 862 | T | A | F→I | 0.044 |
| ORF295 | Putative succinate dehydrogenase | 25 863 | T | A | F→Y | –0.103 |