Figure 3.

A Make rule for performing a sequence alignment using bwa mem [4]. Two paired fastq (.fq) files are used to produce a SAM alignment file. Symbols are used to represent various pattern matching elements of filenames.

A Make rule for performing a sequence alignment using bwa mem [4]. Two paired fastq (.fq) files are used to produce a SAM alignment file. Symbols are used to represent various pattern matching elements of filenames.