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. 2017 May 12;3(5):e1602952. doi: 10.1126/sciadv.1602952

Table 2. I-SAD structure solution and refinement statistics.

Protein
NarQ KR2 MACR A2AAR-BRIL-ΔC
Structure solution and initial model building
  Data Eight anomalous +
native
Data set #8 +
native
Four anomalous +
native
Three anomalous +
native
Seven anomalous +
native
  Method I-SAD I-SIRAS I-SAD I-SIRAS I-SAD I-SIRAS I-SAD I-SIRAS
  Initial resolution range (Å) 60−2.7 60−2.7 60−2.5 60−2.5 60−2.0 60−2.0 60−2.8 60−2.8
  Number of residues in
the protein
237 288 220 447
  Substructure 14·I 10·I 16·I 17·I 26·I
14·I
16·I 8·I 10·I
  Resolution cutoff for
substructure search (Å)
3.0 2.8 2.8 2.8 2.5 2.9 3.7 3.9
  Resolution extension by
native data (Å)
1.95 1.95 2.5 2.5 2.0 2.0 2.4 2.4
  CCall/CCweak 40/15.4 31.8/18.1 42.6/20.7 37.7/25.1 28.8/15.3 29.8/19.6 35.0/14.8 36.7/21.4
  Solvent content used
in SHELXE (%)
47 47 58 59 50 50 49 49
  CCmap, highest-resolution shell (%) 74 77 67 84 87 81 73 74
  Number of Ala residues
traced by SHELXE
178 187 212 208 190 272 155 250
  Rwork/Rfree after initial
model building (%)
23.0/28.5* 24.8/32.9* 22.4/30.1* 22.6/29.3* 24.2/29.2†‡ 29.4/32.7 29.7/46.2* 29.9/32.7 30.7/32.9 29.5/45.8*
  Number of residues built
in initial model building
215* 216* 235* 265* 343†‡ 300 69* 319 277 168*
Structure refinement
  Data set (see Table 1) 8 3 3 2
  Rwork/Rfree final (%) 19.0/26.2 19.0/22.6 17.7/21.9 23.4/29.4
  Number in the ASU (asymmetric unit)
    Protein residues 223 268 431 388
    Water molecules 60 49 78 64
    Iodide ions 12 20 22 6
  Averaged B-factors (Å2)
    Protein residues 43 40 38 38
    Water molecules 34 44 47 27
    Iodide ions 70 66 71 50
  Ramachandran plot
    Preferred 216 (99.1%) 259 (97.4%) 419 (98.4%) 373 (97.9%)
    Allowed 2 (0.9%) 6 (2.2%) 7 (1.6%) 7 (1.8%)
    Outliers 0 1 (0.4%) 0 1 (0.3%)

*Initial model built by ARP-wARP.

†Phasing carried out using phenix.autosol (all others used SHELXC/D/E).

‡Initial model built by phenix.autobuild.