Table 5.
Detected significant SNPs located within annotated genes.
| QTS | Chr. | Allele | Trait | Gene ID | Gene Annotation |
|---|---|---|---|---|---|
| rs5137246 | 6 | T/G | GYD | LOC_Os06g10090 | hypothetical protein |
| rs17926420 | 12 | C/A | GYD,GYD|NFGP,GYD|GW | LOC_Os12g29990 | O-sialoglycoprotein endopeptidase, putative, expressed |
| rs26302731 | 6 | G/A | GYD,GYD|NP | LOC_Os06g43680 | palmitoyltransferase TIP1, putative, expressed |
| rs15874222 | 2 | T/A | GYD|GW | LOC_Os02g27000 | ATP-binding region, ATPase-like domain containing protein, expressed |
| rs28567251 | 3 | T/C | GYD|NFGP | LOC_Os03g50090 | transposon protein, putative, CACTA, En/Spm subclass, expressed |
| rs28377293 | 6 | G/C | GYD|NFGP | LOC_Os06g46720 | retrotransposon protein, putative, unclassified, expressed |
| rs28331893 | 7 | A/C | GYD|NFGP | LOC_Os07g47360 | CW-type Zinc Finger, putative, expressed |
| rs11756284 | 2 | T/G | GYD|NP | LOC_Os02g19980 | expressed protein |
| rs5137241 | 6 | T/C | GYD|NP | LOC_Os06g10090 | hypothetical protein |
| rs3063720 | 10 | G/A | GYD|NP | LOC_Os10g06030 | OsWAK103 - OsWAK receptor-like protein kinase, expressed |
| rs18309603 | 12 | A/G | GYD|NP | LOC_Os12g30500 | DUF593 domain containing protein, expressed |
| rs28989077 | 3 | C/T | NP | LOC_Os03g50780 | PHD finger domain containing protein, putative, expressed |
| rs20829501 | 7 | C/T | NP | LOC_Os07g34770 | transposon protein, putative, CACTA, En/Spm subclass, expressed |
| rs9429313 | 10 | A/C | NP | LOC_Os10g18590 | retrotransposon protein, putative, unclassified, expressed |
| rs27878540 | 3 | C/T | NFGP | LOC_Os03g48950 | expressed protein |
| rs29922937 | 3 | A/T | NFGP | LOC_Os03g52110 | retrotransposon protein, putative, Ty3-gypsy subclass, expressed |
| rs12778614 | 2 | A/T | GW | LOC_Os02g21530 | expressed protein |
| rs18572583 | 3 | T/C | GW | LOC_Os03g32480 | retrotransposon protein, putative, unclassified, expressed |
Note: Gene annotation information comes from the database: MSU Rice Genome Annotation Project Release 7, http://rice.plantbiology.msu.edu/index.shtml.