Table 1.
Number of reads based on Illumina sequencing data in libraries.
| Sample | Raw reads | Raw bases | Clean reads | Clean bases | Valid ratio (base) | Q30 (%) | GC content (%) |
|---|---|---|---|---|---|---|---|
| R1 | 37269064 | 5590359600 | 37269064 | 5590329804 | 99.99% | 115.11% | 46.50% |
| R2 | 36119336 | 5417900400 | 34113624 | 5108386065 | 94.28% | 87.31% | 47.00% |
| R3 | 34197908 | 5129686200 | 34197908 | 5129658786 | 99.99% | 114.51% | 45.50% |
| S1 | 37075374 | 5561306100 | 34599742 | 5180515674 | 93.15% | 86.17% | 46.00% |
| S2 | 36549070 | 5482360500 | 34631914 | 5186131672 | 94.59% | 87.64% | 47.00% |
| S3 | 33450420 | 5017563000 | 31620974 | 4735185696 | 94.37% | 87.45% | 46.00% |