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. 2016 Dec 22;34(3):509–524. doi: 10.1093/molbev/msw283

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© The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Fig. 5 — We computed F_ST in different non-African populations (CEU, CHB, PEL, MXL) against African Yoruba (YRI) in the TBX15/WARS2 region. We find a significant (P < 0.01) local increase in F_ST in American populations (PEL, MXL) exactly where the introgressed haplotype is inferred to be (CRF-tract: vertical dashed lines, HMM-tract: vertical dotted lines). In contrast, we found no significant increase in F_ST when comparing Europeans (CEU) and East Asians (CHB) against YRI (although there is an observable but non-significant peak in CHB). 99th percentile values of the F_ST empirical distribution for all comparisons are represented as horizontal dotted lines and color-coded according to the corresponding population.