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. 2016 Dec 22;34(3):509–524. doi: 10.1093/molbev/msw283

Table 1.

The 28 SNPs in the 99.95% Highest PBS Quantile in Greenlandic Inut That Lie in the Introgressed Tract as Determined by the HMM.

CHR POS SNP ID REF ANC NONSEL SEL GR FREQ CHB FREQ CEU FREQ ALTAI VIN DEN HG00436 HG00407 UST’-ISHIM STUTTGART LOSCHBOUR
1 119570095 rs2298080 G A G A 0.997382 0.4545 0.1833 2 2 2 2 0 0 0 0
1 119571463 rs10923735 C T C T 0.997382 0.4545 0.1833 2 2 2 2 0 0 0 0
1 119574289 rs12030972 G G G A 0.997382 0.4545 0.1833 0 0 0 2 0 0 0 0
1 119574537 rs12026409 G G G A 0.997382 0.4545 0.1833 0 0 0 2 0 0 0 0
1 119557151 rs10923726 A A A G 0.997382 0.4659 0.1833 0 0 2 2 0 0 0 0
1 119557772 rs4659140 T T T C 0.997382 0.4659 0.1833 0 0 0 2 0 0 0 0
1 119558112 rs12027501 C C C G 0.997382 0.4659 0.1833 0 0 0 2 0 0 0 0
1 119558126 rs12027524 C T C T 0.997382 0.4659 0.1833 2 2 2 2 0 0 0 0
1 119559155 rs12410034 A T A T 0.997382 0.4659 0.1833 2 2 2 2 0 0 0 0
1 119559260 rs4659141 T T T G 0.997382 0.4659 0.1833 0 0 0 2 0 0 0 0
1 119559297 rs4658995 C C C T 0.997382 0.4659 0.1833 2 2 2 2 0 0 0 0
1 119559607 rs1325932 C T C T 0.997382 0.4659 0.1833 2 2 2 2 0 0 0 0
1 119559793 rs1325931 A C A C 0.997382 0.4659 0.1833 2 2 2 2 0 0 0 0
1 119559796 rs1325930 A A A C 0.997382 0.4659 0.1833 2 2 2 2 0 0 0 0
1 119560089 rs10923730 C C C G 0.997382 0.4659 0.1833 2 2 2 2 0 0 0 0
1 119560512 rs963171 A T A T 0.997382 0.4659 0.1833 2 2 2 2 0 0 0 0
1 119561611 rs3951792 G G G A 0.997382 0.4659 0.1833 0 0 2 2 0 0 0 0
1 119562014 rs12024063 G G G A 0.997382 0.4659 0.1833 0 0 0 2 0 0 0 0
1 119562180 rs12031562 C C C G 0.997382 0.4659 0.1833 0 0 2 2 0 0 0 0
1 119562274 rs12031597 C C C T 0.997382 0.4659 0.1833 2 2 2 2 0 0 0 0
1 119562382 rs12021830 T C T C 0.997382 0.4659 0.1833 2 2 2 2 0 0 0 0
1 119562460 rs10923733 A A A G 0.997382 0.4659 0.1833 2 2 2 2 0 0 0 0
1 119562557 rs10494218 A T A T 0.997382 0.4659 0.1833 2 2 2 2 0 0 0 0
1 119562716 rs10494219 T C T C 0.997382 0.4659 0.1833 2 2 2 2 0 0 0 0
1 119562920 rs12402563 G G G C 0.997382 0.4659 0.1833 0 0 2 2 0 0 0 0
1 119562932 rs12405154 C C C T 0.997382 0.4659 0.1833 2 2 2 2 0 0 0 0
1 119563172 rs12025128 G A G C 0.997382 0.4659 0.1833 2 2 2 2 0 0 0 0
1 119563638 rs113389819 G C G C 0.997382 0.4659 0.1833 2 2 2 2 0 0 0 0

CHR, chromosome; POS, position (hg19); SNP ID, dbSNP rs ID number; REF, reference allele; ANC, human–chimpanzee ancestor allele (based on EPO alignments); NONSEL, non-selected allele; SEL, selected allele; GR FREQ, frequency of the selected allele in Greenlandic Inuit; CHB FREQ, frequency of the selected allele in CHB (Chinese individuals from Beijing); CEU FREQ, frequency of the selected allele in CEU (Individuals of Central European descent living in Utah); ALTAI, selected allele counts in the high-coverage Altai Neanderthal genome; VIN, selected allele counts in the high-coverage Vindija Neanderthal genome (https://bioinf.eva.mpg.de/jbrowse/); DEN, selected allele counts in the Denisova genome; HG00436, selected allele counts in a present-day human genome that is homozygous for the introgressed tract; HG00407, selected allele counts in a present-day human genome that is homozygous for the absence of the tract; UST’-ISHIM, selected allele counts in the Ust’-Ishim genome; STUTTGART, selected allele counts in the Stuttgart genome; LOSCHBOUR, selected allele counts in the Loschbour genome.