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. 2017 Apr 26;7:1178. doi: 10.1038/s41598-017-01348-5

Figure 1.

Figure 1

Workflow used to construct the ssDNA 3D structures from the sequence. The approach consists of four main steps, involving building the ssDNA secondary structure from the sequence using Mfold (step 1), constructing refined equivalent 3D ssRNA models using Assemble2/Chimera (step 2), translating the 3D ssRNA models into ssDNA models using VMD (step 3), and refining the 3D ssDNA structures using VMD (step 4).