Table 3.

Summary of sequencing and assembly of the transcriptome.

Sample	Raw Reads	Q20(%)	Clean reads	Total mapped	Unigene number	Unigene average length	Unigene N50
Zygo	9074040	98.61	8938449	8249875(92.30%)	27982	1359	2523
blas	11607799	98.45	11464762	10501144(91.59%)	32982	1229	2402
gast	10995688	98.29	10856202	9669177(89.07%)	35979	1166	2323
Lbe	9754060	98.29	9597397	8673620(90.37%)	35526	1174	2298
Lim	8429023	97.83	8335436	7591593(91.08%)	37455	1286	2364
Nauplius	8926413	98.1	8789630	8174251(93.00%)	37531	1337	2348
Zoea	9997945	98.27	9823628	9135914(93.00%)	41711	1299	2264
Mysis	7537908	98.1	7420229	6841843(92.21%)	42655	1319	2239
Postlarvae	8090871	98.1	7961868	7267765(91.28%)	46853	1246	2161
C_1	8462163	98.64	8378139	7205223(86.00%)	50205	1136	2152
C_2	8356671	98.68	8281105	7228674(87.29%)	52156	1112	2109
D0_1	9729632	98.63	9658189	8372908(86.69%)	56217	1063	2059
D0_2	9001963	98.74	8949633	7698406(86.02%)	50493	1133	2147
D1_1	7069133	98.52	7010089	5949698(84.87%)	53411	1102	2085
D1_2	8289817	98.58	8237292	9226254(86.42%)	54246	1085	2097
D2_1	10758027	98.66	10676498	9226254(86.42%)	55917	1060	2059
D2_2	9878904	98.74	9801263	8596987(87.71%)	56264	1068	2070
D3_1	8732484	98.65	8665896	7228584(83.41%)	43427	1189	2256
D3_2	8414766	98.68	8350596	6939910(83.11%)	48107	1139	2160
D4_1	10154005	98.79	10078307	8667790(86.00%)	55468	1064	2066
D4_2	9650580	98.81	9598685	8199145(85.42%)	54727	1082	2077
P1_1	10570861	98.71	10500814	9255363(88.14%)	51858	1117	2126
P1_2	10017393	98.69	9937550	8650085(87.04%)	51350	1122	2133
P2_1	10205898	98.78	10135988	8787490(86.70%)	57581	1047	2030
P2_2	10073944	98.70	9993119	8832160(88.38%)	55285	1071	2068