Table 8. The alteration frequency of a seven-gene signature (CAP2, CAP1, DSTN, CFL1 CFL2, ACTB, ACTG1) in cancers.
Cancer | Data source | N | Frequency (%) | Amplification (%N) | Deletion (%N) | Mutation (%N) | Multiple alterations (%N) |
---|---|---|---|---|---|---|---|
NEPC | Trento/Cornell/Broad 2016 | 107 | 40.2% | 38.3% (41) | 0.9% (1) | 0.9% (1) | |
Pancrease | UTSW | 109 | 38.5% | 31.2% (34) | 4.6% (5) | 1.8% (2) | 0.9% (1) |
Ovarian | TCGA | 311 | 32.5% | 28.3% (88) | 2.9% (9) | 1% (3) | 0.3% (1) |
Bladder | TCGA 2014 | 127 | 29.9% | 16.5% (21) | 9.4% (12) | 3.9% (5) | |
Bladder | TCGA 127 | 127 | 29.9% | 17.3% (22) | 7.9% (10) | 4.7% (6) | |
CCLE | Novartis/ Broad 2012 | 881 | 24.1% (212) | 4.1% (36) | |||
Lung adeno | TCGA | 230 | 29.9% (44) | 17.3% (10) | 7.9% (4) | 4.7% (1) | |
Melanoma | TCGA | 287 | 25.7% | 19.1% (44) | 4.3% (23) | 0.4% (2) | 1.7% (4) |
Lung adeno | TCGA pub | 230 | 25.4% | 15.3% | 0.7% () | 8% () | 1.4% () |
Esophagus | TCGA | 184 | 25.2% | 20.7% (38) | 1.6% (3) | 2.7% (5) | |
Ovarian | TCGA pub | 316 | 25% | 19.9% (63) | 0.9% (3) | 1.3% (4) | |
Lung Squ | TCGA | 177 | 22% | 14.1% (25) | 1.7% (3) | 5.6% (10) | 0.6% (1) |
Uterine | TCGA | 242 | 21.9% | 10.7% (26) | 0.4 (1) | 10.7 (26) | |
Stomach | TCGA pub | 287 | 21.6% | 9.1% (26) | 4.5% (13) | 6.6% (19) | 1.4% (4) |
Uterine | TCGA pub | 240 | 20% | 8.8% (21) | 0.4% (1) | 10.8% (26) |