Table 1.
List of significant markers (−log10(P) > 3.0) for anther extrusion in spring and winter wheat panels based on their BLUEs values.
SNP | Panel | Chr. | Pos. | −log10(P) | Effect | %R2 | Variant | Gene |
---|---|---|---|---|---|---|---|---|
JD_c285_1438 | Winter | 1A | 115.39 | 3.51 | 1.462 | 14.51 | A | Traes_1AL_48F565722 |
Kukri_c51474_334 | Winter | 1B | 70.08 | 3.06 | −1.240 | 10.72 | A | Traes_1BL_49BF78501 |
RAC875_c1755_971 | Winter | 2B | 66.20 | 3.34 | 1.358 | 11.74 | C | - |
wsnp_Ex_c51352_55323092 | Spring | 2B | 97.37 | 3.09 | 1.476 | 9.75 | C | Traes_2BS_93E49A2FF |
BS00013584_51 | Spring | 3A | 77.51 | 3.14 | 1.519 | 11.35 | A | Traes_3AS_491B176E2 |
GENE-4918_283 | Spring | 3B | 57.24 | 3.92 | 2.003 | 13.83 | T | TRAES3BF175400030CFD_g |
BS00016407_51 | Spring | 3B | 57.24 | 3.82 | 1.990 | 14.14 | C | - |
IAAV8162 | Spring | 3B | 57.24 | 3.82 | 1.990 | 14.14 | A | TRAES3BF175400030CFD_g |
Excalibur_c25390_2483 | Spring | 6A | 138.31 | 3.06 | −1.421 | 10.93 | A | Traes_6AL_65FBA1460 |
Excalibur_c3959_118 | Winter | 6A | 140.87 | 3.67 | −1.540 | 12.38 | T | Traes_6AL_2A11939F7 |
wsnp_Ku_c16522_25425455 | Winter | 6B | 71.18 | 3.18 | −1.378 | 16.98 | C | Traes_6BL_D816BA883 |
tplb0061f12_679 | Winter | 6B | 71.76 | 3.62 | −1.563 | 14.28 | A | Traes_6BL_A7A807541 |
RFL_Contig1015_620 | Winter | 6B | 71.76 | 3.62 | −1.563 | 14.28 | C | Traes_6BL_414885850 |
wsnp_Ku_c3185_5949143 | Winter | 6B | 71.76 | 3.62 | −1.563 | 14.28 | T | Traes_6BL_9145A9A11 |
RAC875_rep_c108200_137 | Winter | 6B | 71.76 | 3.62 | −1.563 | 14.28 | T | Traes_6BL_A5614E593 |
TA001470-0628 | Winter | 6B | 71.76 | 3.62 | −1.563 | 14.28 | A | Traes_6BL_8960BC410 |
Kukri_rep_c116323_79 | Winter | 6B | 71.76 | 3.60 | −1.517 | 13.78 | A | - |
Tdurum_contig42487_1555 | Spring | 7A | 212.66 | 4.36 | −1.548 | 13.27 | T | Traes_7AL_3ACEF0277 |
wsnp_BE443010B_Ta_2_1 | Spring | 7B | 76.31 | 3.89 | 1.782 | 11.42 | C | Traes_7BL_566C6F683 |
Excalibur_c20309_539 | Spring | unm | unm | 4.57 | 1.542 | 14.27 | C | Traes_3DL_4A818FD98 |
Kukri_rep_c110544_248 | Spring | unm | unm | 4.33 | 1.507 | 14.24 | A | Traes_3DL_C1FD5EB05 |
GENE-3863_132 | Spring | unm | unm | 3.16 | 1.548 | 10.14 | G | Traes_6BL_729B4C623 |
wsnp_Ex_c3670_6694480 | Winter | unm | unm | 3.07 | 1.772 | 9.44 | G | Traes_5AL_D05BE87FD |
unm stands for unmapped SNPs.
% R2 represents percentage of phenotypic variance imparted by individual SNP; Variant represents minor allele.