Table 5.

Numbers of genes and proteins associated with cytoskeletal-muscle fibers, phosphorylation regulation, cellular quality control mechanisms (proteosome and autophagy) that were higher (H) or lower (L) in breast muscle of high feed efficiency (FE) compared to low FE pedigree broiler male for the terms provided obtained from global expression microarray, proteomics, and RNAseq datasets and for numbers of all three global expression datasets combined.

	Microarraya			Proteomicsb			RNAseqc
Term	H	L	P*	H	L	P*	H	L	P*	H
PHOSPHORYLATION
Cytoskeletal-muscle fibersd	9	20	0.0004	7	21	0.0044	21	42	0.0030	35
Protein tyrosine phosphatase	2	1		2	0		5	27	0.0020	9
Protein phosphatase	4	2		7	1	0.0313	30	24	0.0778	41
Tyrosine kinase	6	4		1	0		11	31	0.001	17
QUALITY CONTROL
Proteosome	7	3	0.1172	21	4	0.0004	31	4	2E-06	59
Autophagy	6	2	0.1093	4	0	0.0625	36	15	0.0014	49

^acDNA microarray—Kong et al. (2011).

^bShotgun proteomics—Kong B. et al. (2016).

^cRNAseq—Bottje et al. (2017).

^dActin (ACTA), myosin (MYH), troponin (TNNT).

^*Binomial (exact) P values for H vs. L in each dataset. Blanks are indicative of P > 0.10.

P values not underlined indicate a significant bionomial skew in high FE.

P values that are underlined indicate a significant skew in low FE.

P values that are blank are indicative of values > 0.10.