TABLE 1.
FISH probe sequences
| Probe | Sequence (5′-3′) |
|---|---|
| KSHV Rta_1 | CCCACCTACACCATTGTAAA |
| KSHV Rta_2 | GTAGAGCTTGGCGAACTCTG |
| KSHV Rta_3 | TTAATAAGAGCCCTGACACC |
| KSHV Rta_4 | CTTTGGTCAAGTACACCGAA |
| KSHV Rta_5 | TACAGACCCAACCTAGGTTC |
| KSHV Rta_6 | GATCCTTTTTTGCCTGGTAC |
| KSHV Rta_7 | AACTCTCCTGAAAAGCACCG |
| KSHV Rta_8 | TTGTCCACATAATCAGCACG |
| KSHV Rta_9 | CGGTGCATTTACGAGCAGAA |
| KSHV Rta_10 | CAGCTGTCGTTCAGATGTAC |
| KSHV Rta_11 | ATTTTAACGTGCAGCTGAAC |
| KSHV Rta_12 | TACGAGGACTTTCAGGATAC |
| KSHV Rta_13 | GATGGCCAGCGTGGTAAAAA |
| KSHV Rta_14 | AACAACGCACAACGGGACGT |
| KSHV Rta_15 | GCTCCGAAGTTAGGGATATC |
| KSHV Rta_16 | AGTTTTGACTCTCCAATACC |
| KSHV Rta_17 | AGAGCTCATTAAGGGACTGC |
| KSHV Rta_18 | CTGGCTGCATAGGTTTTGAG |
| KSHV Rta_19 | TATTAACGGCATGCTGCCAC |
| KSHV Rta_20 | GCAACGACAAGATAAGGGGT |
| KSHV Rta_21 | CTGCAGCAGTTGTACAAACT |
| KSHV Rta_22 | TAGGGCGAATTTGGCTTATT |
| KSHV Rta_23 | GACAAAGCGAGCCGTACCTG |
| KSHV Rta_24 | ATTCAGATATTGGTCCAGCA |
| KSHV Rta_25 | GACCCTATACCTTGCAAAGA |
| KSHV Rta_26 | TACCCGCTCTAAACGTTGAG |
| KSHV Rta_27 | TTCAGGAGTTAGATACCCTG |
| KSHV Rta_28 | TTTAGGTATCATTACCCGTC |
| KSHV Rta_29 | AAGATCACCTGTTCAACCAT |
| KSHV Rta_30 | ACAATGACATCGAGAAGGCC |
| KSHV Rta_31 | AGAGTGGCGTGTCATAGTTT |
| KSHV TR_1 | TAAAACAGGGGGGGGGGATG |
| KSHV TR_2 | CACGCCTACTTTTTTTTTCG |
| KSHV TR_3 | CTGGACACTACGTGAACACC |
| KSHV TR_4 | TCAGTGCTTGCTACGTGGAG |
| KSHV TR_5 | CTTGTGTGTGAGCCTGTTTG |
| KSHV TR_6 | TCTACTGTGCGAGGAGTCTG |
| KSHV TR_7 | CCGCGGGAGAAAACGAAAGC |
| KSHV TR_8 | CTCGCACAGTAGAGAGAGGG |
| KSHV TR_9 | CAGGCTCACACACAAGACA |
| KSHV TR_10 | ACGTAGCAAGCACTGAGGAG |
| KSHV TR_11 | AAAAAGTAGGCGTGGCCTAG |